PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519374.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 525aa    MW: 58417.4 Da    PI: 4.7568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.11.3e-1231545252374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+  A+a+++g  e+a+a++++l++ +s +gdp+qR+ ay+te+Laar+  s++ lykal+++e +   sse+laa+++++ev+P++kf+++
  XP_010519374.1 154 KQMLIYSARALAEGRVEEASAMINELRQVVSVNGDPLQRASAYMTEGLAARVEASGKCLYKALRCKEPP---SSERLAAMQILFEVCPCFKFGFM 245
                     578999**************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +aN +I +a+ege+rvHiiDfdi+qG Q+++Llq+ a  + +  p+lR+Tgv++pes+      le +g rL+++A+ lgv+fef++ v  + ++
  XP_010519374.1 246 AANGTIIKAFEGESRVHIIDFDINQGSQYMTLLQTVAGLSeAARPHLRLTGVDDPESVqrIVGGLEIIGLRLQELADILGVSFEFKA-VPAKASS 339
                     *************************************66648899***********99777899***********************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++ +L+ +pgEal+Vn+++qlh+l+desvs++++rd++L++vk+++Pk+v+++eq++++n+++F+ rf+ea +yy+a++ sl++++pr s++r+
  XP_010519374.1 340 VTPTMLDRRPGEALIVNFAFQLHHLPDESVSTTNQRDKLLRMVKGMNPKLVTMAEQDVNTNTAPFFPRFIEAYNYYTAVYKSLDVTMPRGSQDRM 434
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vEr++l+r+ivn++aceg+er+er e ++kWr+r+++aGF++ p++  + + +k ++++ + d y+v+ee gsl +gW+d++L+ +SaW+
  XP_010519374.1 435 NVERHCLARDIVNIIACEGEERVERYEVAGKWRARMTMAGFTSCPMNPGMIDVIKKMIKEQYCDKYKVKEELGSLHFGWEDKSLIIASAWT 525
                     **************************************************************999*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.918127505IPR005202Transcription factor GRAS
PfamPF035144.6E-121154525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSFSVHPQMS STIGGGANMS MNFDNKTVLS KDVSGLDKHL NAVVSGLLDK ESNEENLSFY  60
SAMEEEIQQG ARGSAGDCQS FELFNFNETE TRLKLRELER ALLEDEEEED SFFADEIMGM  120
GECSVTTCTE SSFSEDSSYI SGQAQALLSR GNTKQMLIYS ARALAEGRVE EASAMINELR  180
QVVSVNGDPL QRASAYMTEG LAARVEASGK CLYKALRCKE PPSSERLAAM QILFEVCPCF  240
KFGFMAANGT IIKAFEGESR VHIIDFDINQ GSQYMTLLQT VAGLSEAARP HLRLTGVDDP  300
ESVQRIVGGL EIIGLRLQEL ADILGVSFEF KAVPAKASSV TPTMLDRRPG EALIVNFAFQ  360
LHHLPDESVS TTNQRDKLLR MVKGMNPKLV TMAEQDVNTN TAPFFPRFIE AYNYYTAVYK  420
SLDVTMPRGS QDRMNVERHC LARDIVNIIA CEGEERVERY EVAGKWRARM TMAGFTSCPM  480
NPGMIDVIKK MIKEQYCDKY KVKEELGSLH FGWEDKSLII ASAWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5216152526378Protein SCARECROW
5b3h_D6e-5216152526378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519372.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_010519374.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2N9G30.0A0A0D2N9G3_GOSRA; Uncharacterized protein
TrEMBLA0A0D2N9G60.0A0A0D2N9G6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2PPU60.0A0A0D2PPU6_GOSRA; Uncharacterized protein
TrEMBLA0A1Q3CPH00.0A0A1Q3CPH0_CEPFO; GRAS domain-containing protein
STRINGXP_010519372.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]