PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519375.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 517aa    MW: 57503.4 Da    PI: 4.7166
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS404.21.3e-1231465172374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+  A+a+++g  e+a+a++++l++ +s +gdp+qR+ ay+te+Laar+  s++ lykal+++e +   sse+laa+++++ev+P++kf+++
  XP_010519375.1 146 KQMLIYSARALAEGRVEEASAMINELRQVVSVNGDPLQRASAYMTEGLAARVEASGKCLYKALRCKEPP---SSERLAAMQILFEVCPCFKFGFM 237
                     578999**************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +aN +I +a+ege+rvHiiDfdi+qG Q+++Llq+ a  + +  p+lR+Tgv++pes+      le +g rL+++A+ lgv+fef++ v  + ++
  XP_010519375.1 238 AANGTIIKAFEGESRVHIIDFDINQGSQYMTLLQTVAGLSeAARPHLRLTGVDDPESVqrIVGGLEIIGLRLQELADILGVSFEFKA-VPAKASS 331
                     *************************************66648899***********99777899***********************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++ +L+ +pgEal+Vn+++qlh+l+desvs++++rd++L++vk+++Pk+v+++eq++++n+++F+ rf+ea +yy+a++ sl++++pr s++r+
  XP_010519375.1 332 VTPTMLDRRPGEALIVNFAFQLHHLPDESVSTTNQRDKLLRMVKGMNPKLVTMAEQDVNTNTAPFFPRFIEAYNYYTAVYKSLDVTMPRGSQDRM 426
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vEr++l+r+ivn++aceg+er+er e ++kWr+r+++aGF++ p++  + + +k ++++ + d y+v+ee gsl +gW+d++L+ +SaW+
  XP_010519375.1 427 NVERHCLARDIVNIIACEGEERVERYEVAGKWRARMTMAGFTSCPMNPGMIDVIKKMIKEQYCDKYKVKEELGSLHFGWEDKSLIIASAWT 517
                     **************************************************************999*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.918119497IPR005202Transcription factor GRAS
PfamPF035144.4E-121146517IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSSTIGGGAN MSMNFDNKTV LSKDVSGLDK HLNAVVSGLL DKESNEENLS FYSAMEEEIQ  60
QGARGSAGDC QSFELFNFNE TETRLKLREL ERALLEDEEE EDSFFADEIM GMGECSVTTC  120
TESSFSEDSS YISGQAQALL SRGNTKQMLI YSARALAEGR VEEASAMINE LRQVVSVNGD  180
PLQRASAYMT EGLAARVEAS GKCLYKALRC KEPPSSERLA AMQILFEVCP CFKFGFMAAN  240
GTIIKAFEGE SRVHIIDFDI NQGSQYMTLL QTVAGLSEAA RPHLRLTGVD DPESVQRIVG  300
GLEIIGLRLQ ELADILGVSF EFKAVPAKAS SVTPTMLDRR PGEALIVNFA FQLHHLPDES  360
VSTTNQRDKL LRMVKGMNPK LVTMAEQDVN TNTAPFFPRF IEAYNYYTAV YKSLDVTMPR  420
GSQDRMNVER HCLARDIVNI IACEGEERVE RYEVAGKWRA RMTMAGFTSC PMNPGMIDVI  480
KKMIKEQYCD KYKVKEELGS LHFGWEDKSL IIASAWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5215351727379Protein SCARECROW
5b3h_A5e-5215351726378Protein SCARECROW
5b3h_D5e-5215351726378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519372.10.0PREDICTED: scarecrow-like protein 1 isoform X1
RefseqXP_010519374.10.0PREDICTED: scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2N9G30.0A0A0D2N9G3_GOSRA; Uncharacterized protein
TrEMBLA0A0D2N9G60.0A0A0D2N9G6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2PPU60.0A0A0D2PPU6_GOSRA; Uncharacterized protein
TrEMBLA0A1Q3CPH00.0A0A1Q3CPH0_CEPFO; GRAS domain-containing protein
STRINGXP_010519372.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]