PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519478.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 358aa    MW: 39763.3 Da    PI: 7.8208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07131152223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_010519478.1 131 FCEICGKGFKRDANLRMHMRAH 152
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-6127153No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6130152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SMARTSM0035572182215IPR015880Zinc finger, C2H2-like
SMARTSM0035576220242IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMMACSFPGD YSDSRVPLQR LETVRMRMDS LQSFLAESVN GSVILGKDQM DTISSEIASA  60
LEQVIFDGAA LLSCLQQPSL PPESPAKPSG RDPDHVLRIP NPSEKRGHKK LDDCDVIELD  120
AVEILAEHVH FCEICGKGFK RDANLRMHMR AHGDQYKTTE ALLKPAEAPP RDLTAGHRKI  180
LFSCPHEGCN RNRRHKRFRP LKSVVCVRNH FKRSHCPKLF SCHRCLKKSF SVLADLKTHQ  240
KHCGESTAIS TSAAVVAAAP TARWRCSCGT SFTRKDKLFG HVANFEGHMP AVTALSIATD  300
TANAEEGTAR SGRRDEAFSD ELLDGFYPMQ GFSFEDILQS PVGFSCKGDH ESEIFTYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519478.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A2C9UW631e-122A0A2C9UW63_MANES; Uncharacterized protein
STRINGXP_010519478.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-69C2H2 family protein