PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519640.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 290aa    MW: 32573.8 Da    PI: 6.4293
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.7e-082392722154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_010519640.1 239 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 272
                     469*****************************87 PP
2ELK29.51.7e-10193214122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010519640.1 193 ELKHELKQGYKEKIVDIREEIL 214
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-202973IPR005540KNOX1
PfamPF037904.7E-183272IPR005540KNOX1
SMARTSM012562.7E-2984139IPR005541KNOX2
PfamPF037911.5E-2188138IPR005541KNOX2
PfamPF037896.2E-7193214IPR005539ELK domain
PROSITE profilePS512139.969193213IPR005539ELK domain
SMARTSM011886.1E-4193214IPR005539ELK domain
PROSITE profilePS5007111.726213276IPR001356Homeobox domain
SMARTSM003892.4E-11215280IPR001356Homeobox domain
SuperFamilySSF466892.52E-16215279IPR009057Homeodomain-like
CDDcd000861.68E-11216277No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25220277IPR009057Homeodomain-like
PfamPF059207.0E-18233272IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGGEMKGGGG EKAEGGTAAA EGVVNWQEAR NKAEILSHPL YEQLLSAHVA CLRIATPVDQ  60
LPRIDAQLAQ SQHVVSKYST LGPSQGLVGD DKELDQFMTH YVLLLCSFKE QLQQHVRVHA  120
MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDEDEQVES DANMFDGSLD GLGFGPLIPT  180
ETERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW  240
PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPSS STVLKNKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13216280872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269289RKRNWHSNPSSSTVLKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519640.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1J3G8W60.0A0A1J3G8W6_NOCCA; Homeobox protein knotted-1-like 3
TrEMBLA0A1J3HV970.0A0A1J3HV97_NOCCA; Homeobox protein knotted-1-like 3
TrEMBLA0A1J3K8E60.0A0A1J3K8E6_NOCCA; Homeobox protein knotted-1-like 3
STRINGXP_010519640.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]