PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519700.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23194.6 Da    PI: 8.1974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.2e-24959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienks rqvtfskRr g+l KA  LSvLCda vav+++ss++kly +ss
  XP_010519700.1  9 KRIENKSSRQVTFSKRRGGLLEKARQLSVLCDAAVAVLVVSSSDKLYSFSS 59
                    79***********************************************96 PP
2K-box34.77.5e-13971653098
           K-box  30 nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      L++   +l+  +L++ s+  L+q+e qLe +l+  R++K++llle+++ l++ke++l+ee + L +++
  XP_010519700.1  97 LLETLESRLKEPNLGNVSIDFLNQMEWQLEGALSAARARKTQLLLESLKALKEKENSLREESQLLASQF 165
                     444445557777899*************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.086161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-27275IPR002100Transcription factor, MADS-box
CDDcd002656.86E-32270No hitNo description
PRINTSPR004041.2E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.50181171IPR002487Transcription factor, K-box
PfamPF014867.2E-998165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRRKVEIKR IENKSSRQVT FSKRRGGLLE KARQLSVLCD AAVAVLVVSS SDKLYSFSSG  60
ESLTRILARY WEQQAEEDVK DLDLRLESGN YLSTKELLET LESRLKEPNL GNVSIDFLNQ  120
MEWQLEGALS AARARKTQLL LESLKALKEK ENSLREESQL LASQFACMYV CIYICMDGRM  180
RRHTIGHREE REREREGCLE M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17172171MEF2 CHIMERA
6byy_B2e-17172171MEF2 CHIMERA
6byy_C2e-17172171MEF2 CHIMERA
6byy_D2e-17172171MEF2 CHIMERA
6bz1_A2e-17172171MEF2 CHIMERA
6bz1_B2e-17172171MEF2 CHIMERA
6bz1_C2e-17172171MEF2 CHIMERA
6bz1_D2e-17172171MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering time, probably through the photoperiodic and vernalization pathways; more efficient in cv. Landsberg erecta than in cv. Columbia background. Prevents premature flowering (PubMed:12724541, PubMed:25339407). Involved in the modulation of vernalization impact on flowering according to genotype acclimation to altitude (PubMed:25339407). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:25339407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed during vernalization (PubMed:12724541). Regulated by HAM1 and HAM2 via epigenetic modification of chromatins at H4K5 acetylation during flowering (PubMed:23273925). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:23273925}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519700.11e-143PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
SwissprotQ9LSR75e-59AGL70_ARATH; Agamous-like MADS-box protein AGL70
TrEMBLA0A087GE894e-61A0A087GE89_ARAAL; Uncharacterized protein
STRINGXP_010519690.11e-111(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.18e-37MIKC_MADS family protein
Publications ? help Back to Top
  1. Conte MG,Gaillard S,Droc G,Perin C
    Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
    BMC Genomics, 2008. 9: p. 183
    [PMID:18426584]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]
  3. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]