PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519882.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 319aa    MW: 34999.4 Da    PI: 4.7018
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18213247135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010519882.1 213 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 247
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-811302IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.609207243IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-18207257IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-16208271No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14209244IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.53E-15212259No hitNo description
PfamPF003201.1E-15213247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEAEAPEFFH APDHFAVDDL LVDFSDHDDD DDENDVLPDP DADVATALAD SSNSSSSSGN  60
GPTNLSGDVP DGTSFSGDLG VPYDDMAELE WLSSFVEESF AGEDVQKLHL ISGFTKTRPE  120
SSNPNPNSTN SSIFTADVSV PAKARSKRSR AAASNWASRR LLAVDPNTNP TEPDDPSMAV  180
FPQSPPPPQT QKKSGGWSRR KDAGEGGGEE RRCLHCATDK TPQWRTGPMG PKTLCNACGV  240
RYKSGRLVPE YRPAASPTFV LTKHSNSHRK VMELRRQKEM MRVQHEFLHP TDDMIFDVSS  300
DSDHFLIHQS IGPDFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519882.10.0PREDICTED: GATA transcription factor 12
SwissprotP697811e-118GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1J3FP631e-138A0A1J3FP63_NOCCA; GATA transcription factor
STRINGXP_010519882.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-64GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]