PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519889.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 248aa    MW: 26471.3 Da    PI: 5.6269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1853103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++aa+ +++g
  XP_010519889.1  53 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDAAAISIKG 103
                     68*****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-1253103IPR001471AP2/ERF domain
PROSITE profilePS5103222.65554111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3154112IPR001471AP2/ERF domain
SMARTSM003807.9E-3554117IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2154112IPR016177DNA-binding domain
PRINTSPR003671.8E-95566IPR001471AP2/ERF domain
CDDcd000189.12E-2155113No hitNo description
PRINTSPR003671.8E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVVSPSSDYG DRTAENSTTH QLAHKSGHDS ASEEGKKTGL EKGKRVRDSG KHPVYRGVRM  60
RTWGKWVSEI REPRKKSRIW LGTFPNPEMA ARAHDAAAIS IKGASAVLNF PDLSGSLPRP  120
VSLNPRDVQA AALKAAHMET TSSSTSPTSF SSSQSSSSLE SLVSAIDLSS SSSGTGSEDL  180
GEIVELPSLG ASYDGLAQLG GEFVFSESVD FWVYPPPWMQ SSEGEYGYVN GGMPLNPGFD  240
GVLSSWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17511111172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519889.11e-180PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-82DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD7M4A25e-88D7M4A2_ARALL; Uncharacterized protein
STRINGXP_010519889.11e-179(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]