PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520038.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 239aa    MW: 25462.7 Da    PI: 10.0253
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68.2e-073760225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_010520038.1 37 KSKPCTKFFSTSGCPFGENCHFLH 60
                    7789******************** PP
2zf-CCCH35.12.3e-11205230127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+ C +fa+ G C +GdrC+FaHg+
  XP_010520038.1 205 YKTKMCERFAK-GNCTFGDRCHFAHGE 230
                     9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.213562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-63662IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-83760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-15102181IPR004088K Homology domain, type 1
SMARTSM003222.4E-12111181IPR004087K Homology domain
PROSITE profilePS5008414.865112176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-16112180IPR004088K Homology domain, type 1
CDDcd001052.72E-14114176No hitNo description
PfamPF000131.8E-12114178IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.2E-16199235IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7204230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9204234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.065204231IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-8205230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDARKRGRPE AGSYNSNGGF KRSRQEMESY STGLGSKSKP CTKFFSTSGC PFGENCHFLH  60
YVPGGYNAIA HMTNLGPPLP QASRNMPGSG PGRYSGRTEH APPGPVSSFG ASATAKISVD  120
ASLAGAIIGK GGINSKQICR QTGAKLSIQE HERDPNLKNI ELEGTFEQIK EASAMVRELI  180
VRLGAAARKH MGGSSEGKPH PGSSYKTKMC ERFAKGNCTF GDRCHFAHGE AELRKSGVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520038.11e-176PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
SwissprotQ9C7C31e-134C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-139E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-139V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_010520038.11e-176(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-136C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]