PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520046.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 236aa MW: 26644.9 Da PI: 9.0582

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.8	2.4e-28	108	164	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ..kYRl 55 k r++Wt++LH++Fve+v+qLGG+ kAtPk+ilelm+v+ L++ hvkSHLQ kYR+ XP_010520046.1 108 KRRIKWTSDLHDKFVECVNQLGGPTKATPKAILELMEVDELSIFHVKSHLQalKYRS 164 689************************************************778886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-25	105	164	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.037	105	165	IPR017930	Myb domain
SuperFamily	SSF46689	9.5E-14	106	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-22	108	160	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-6	112	160	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MASRRRTPSA SKRSASDDSD KTKHAKPPSC SRPDRADTST RPRCKCFDIS ELFSADGGAK 60 NSASDDKYAS LSGRHSCHVE TKCSSMEGHG RSMRSSTGSE LTKTSSNKRR IKWTSDLHDK 120 FVECVNQLGG PTKATPKAIL ELMEVDELSI FHVKSHLQAL KYRSVSVQAR DHVQVNIDEG 180 YIHHNDSWIK ELMRLQDGVI EHLQEHLQIQ TSLQLMVEEQ NKLFQQIIDH SSRSKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-16	108	164	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-16	108	164	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-16	108	164	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-16	108	164	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	108	164	2	56	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520046.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520046.1	1e-176	PREDICTED: myb family transcription factor PHL5-like isoform X1
TrEMBL	A0A397XQ85	1e-47	A0A397XQ85_BRACM; Uncharacterized protein
STRING	XP_010520046.1	1e-176	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19527	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-31	G2-like family protein