PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520047.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 235aa MW: 26515.8 Da PI: 9.3008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.8	2.4e-28	107	163	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ..kYRl 55 k r++Wt++LH++Fve+v+qLGG+ kAtPk+ilelm+v+ L++ hvkSHLQ kYR+ XP_010520047.1 107 KRRIKWTSDLHDKFVECVNQLGGPTKATPKAILELMEVDELSIFHVKSHLQalKYRS 163 689************************************************778886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-25	104	163	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.037	104	164	IPR017930	Myb domain
SuperFamily	SSF46689	9.5E-14	105	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-22	107	159	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-6	111	159	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MASRRRTPSA SKRSASDDSD KTKHAKPPSC SRPDRADTST RPRCKCFDIS ELFSADGGAK 60 NSASDDKYAS LSGRHSCHVE TKCSSMGHGR SMRSSTGSEL TKTSSNKRRI KWTSDLHDKF 120 VECVNQLGGP TKATPKAILE LMEVDELSIF HVKSHLQALK YRSVSVQARD HVQVNIDEGY 180 IHHNDSWIKE LMRLQDGVIE HLQEHLQIQT SLQLMVEEQN KLFQQIIDHS SRSKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-16	107	163	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-16	107	163	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-16	107	163	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-16	107	163	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-16	107	163	2	56	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520047.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520047.1	1e-175	PREDICTED: myb family transcription factor PHL5-like isoform X2
TrEMBL	A0A397XQ85	5e-46	A0A397XQ85_BRACM; Uncharacterized protein
STRING	XP_010520046.1	1e-173	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-30	G2-like family protein