PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520114.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Protein Properties

Length: 222aa MW: 25083.9 Da PI: 10.3895

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520114.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.4e-17	128	216	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k ++ps+v+ +l lp +f+++h k ++ +tl de+g+++e + rk++ l++GW +F+ a++L +gD +vF+l++ s f +v + XP_010520114.1 128 VKSMLPSHVSGGFWLGLPVQFCRSHLPK--QDSAMTLIDEEGEVYETIYLARKTG----LSGGWLGFAVAHDLADGDALVFQLVRPSAF--KVYI 214 6899*******************433..4458***********656665....**********************998999..7766 PP E- CS B3 97 fr 98 r XP_010520114.1 215 TR 216 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-23	121	218	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-20	122	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.38E-26	125	216	No hit	No description
PROSITE profile	PS50863	12.083	127	218	IPR003340	B3 DNA binding domain
SMART	SM01019	4.8E-24	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-14	128	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVVKKPSSYE KSRLERLEEN KKRMEALNLP RLSLALQSTS PKSSPMKKSK PRIQEKKLVA 60 VRRSSRLSNH PYPVYKEVTV QRVEIPRRIS KRRDLSNRVY ASDESRAEAL AKAEKLQDEL 120 GDEYPKLVKS MLPSHVSGGF WLGLPVQFCR SHLPKQDSAM TLIDEEGEVY ETIYLARKTG 180 LSGGWLGFAV AHDLADGDAL VFQLVRPSAF KVYITRASGN TP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520114.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520114.1	1e-162	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	1e-92	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1R3HWU6	1e-104	A0A1R3HWU6_9ROSI; Uncharacterized protein
TrEMBL	A0A251REU1	1e-104	A0A251REU1_PRUPE; Uncharacterized protein
STRING	XP_010520114.1	1e-161	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-87	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]