PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520134.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YB

Protein Properties

Length: 187aa MW: 20692.9 Da PI: 6.5142

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.3	1.5e-55	30	125	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqdr+lPian+srimkk+lPan+ki+k+ak+tvqecvsefisfvt+easdkcq+ekrktingddllwa+atlGfe+y+epl++yl++yrele+e XP_010520134.1 30 REQDRYLPIANISRIMKKALPANSKIAKEAKDTVQECVSEFISFVTTEASDKCQKEKRKTINGDDLLWAIATLGFENYIEPLRIYLTRYRELESE 124 89*******************************************************************************************98 PP NF-YB 97 k 97 + XP_010520134.1 125 T 125 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-51	26	131	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-38	32	128	IPR009072	Histone-fold
Pfam	PF00808	3.0E-27	35	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.5E-20	63	81	No hit	No description
PRINTS	PR00615	7.5E-20	82	100	No hit	No description
PRINTS	PR00615	7.5E-20	101	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSNSWTSPPG GGSHESGGGN EHSPHSGATR EQDRYLPIAN ISRIMKKALP ANSKIAKEAK 60 DTVQECVSEF ISFVTTEASD KCQKEKRKTI NGDDLLWAIA TLGFENYIEP LRIYLTRYRE 120 LESETKVSTT RGGDGTRSDA TGFPLVPNAQ MTQFPLQGSV NYANHQGQGH SLVFQSMQEH 180 GNEERQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-47	30	120	2	92	Transcription factor HapC (Eurofung)
4g92_B	6e-47	30	120	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520134.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520134.1	1e-140	PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X3
Swissprot	Q8VYK4	7e-69	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	B9SD43	1e-81	B9SD43_RICCO; Ccaat-binding transcription factor subunit A, putative
STRING	XP_010520132.1	1e-128	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.3	8e-65	nuclear factor Y, subunit B1

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]