PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520137.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 184aa    MW: 20178.6 Da    PI: 6.9095
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.81.4e-5230130297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                     reqdr+lPian+srimkk+lPan+ki+k+ak+tvqecvsefisfvt+e     asdkcq+ekrktingddllwa+atlGfe+y+epl++yl++yr
  XP_010520137.1  30 REQDRYLPIANISRIMKKALPANSKIAKEAKDTVQECVSEFISFVTTEallcrASDKCQKEKRKTINGDDLLWAIATLGFENYIEPLRIYLTRYR 124
                     89********************************************99444445***************************************** PP

           NF-YB  92 elegek 97 
                     ele+e+
  XP_010520137.1 125 ELESET 130
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-4826136IPR009072Histone-fold
SuperFamilySSF471134.02E-3532133IPR009072Histone-fold
PfamPF008081.2E-2335104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.0E-176381No hitNo description
PRINTSPR006157.0E-1787105No hitNo description
PRINTSPR006157.0E-17106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSNSWTSPPG GGSHESGGGN EHSPHSGATR EQDRYLPIAN ISRIMKKALP ANSKIAKEAK  60
DTVQECVSEF ISFVTTEALL CRASDKCQKE KRKTINGDDL LWAIATLGFE NYIEPLRIYL  120
TRYRELESET KVSTTRGGDG TRSDATGFPL VPNAQMTQFP LQGSVNYANH QCPFDMFSCP  180
GSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4430125292Transcription factor HapC (Eurofung)
4g92_B6e-4430125292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520137.11e-138PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X4
SwissprotQ8VYK44e-64NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLB9SD434e-74B9SD43_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGXP_010520132.11e-126(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.38e-62nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]