PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520140.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 326aa    MW: 36505.2 Da    PI: 6.0152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-17132181155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+  ++g
  XP_010520140.1 132 SPYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIMFRG 181
                     68*******************......55**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16132190IPR016177DNA-binding domain
SMARTSM003804.1E-30133195IPR001471AP2/ERF domain
PROSITE profilePS5103217.214133189IPR001471AP2/ERF domain
PfamPF008471.9E-9134181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-17134189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MHLDLSLEIF SGDGESPAGE YHGNGENPAV KSDNLLKDSG ILSEEDSGAS SSSAIYSSTT  60
GGFISFGILQ KDKTIPSPES SNFPAISAAG EKGFEESSDG EKWLKLYDGS NDGDSKPEGK  120
RRSPRGPRSR SSPYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIMFR  180
GPDADINFGA SDYVEEMKQM KKLTKEEIVL VIRRQSNEDR NLYRFRKQWE AKPVQWVARD  240
KVCEISEIGY SNGIRTDRYG IRTSFGSSSG EEQNLELSLG ISPDHANNID KPERDLSQNY  300
TGTNYQMMMM FNNRNHERDK TPSVRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520140.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
STRINGXP_010520140.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-31related to AP2.7