PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520141.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 416aa    MW: 47681.6 Da    PI: 6.4203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  XP_010520141.1  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-590114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953159197IPR000571Zinc finger, CCCH-type
SMARTSM003562.7159196IPR000571Zinc finger, CCCH-type
PfamPF165431.1E-18219295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPPKQQAKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKVD PSKVAVKKKK  60
EEEKAREKEL NELFKVAISQ PKVPPGVDPK SILCEFFKAG QCQKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DKEETMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLE AVEKKQYGWF  180
WACPNGGKDC HYRHALPPGY VLKSQMKALL EEESQKRPVE EEIENERAKL TKSTPMTPEL  240
FMEWKKKKMD ERDAGLAAQQ AERAKNDRMS GRELFLANAS LFVDDAEAYE DYEREKEPEQ  300
SDQKAKSKET EAGPSASAVA GNTSKDVDED EDVDDDDDDL DIDELNELEA SLSKTSIQIH  360
EPTNAVSLHQ WFGYLVKRPR VSLRPSRGRE PKADGERLRR ASDDARARGA RLAYDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520141.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520141.10.0PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X1
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A2R6R7Z00.0A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_010520141.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-169C3H family protein