PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520203.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 228aa MW: 26128.2 Da PI: 8.8158

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.7	4e-11	96	140	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++ E++l++ + +++G+g+W++I+r + ++t+ q+ s+ qk+ XP_010520203.1 96 VWSAYEHKLFLIGLERYGKGDWRSISRNVVVTKTAAQVASHAQKF 140 6******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.62	2	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.52E-7	4	58	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.264	89	145	IPR017930	Myb domain
SuperFamily	SSF46689	4.24E-13	91	146	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-4	93	143	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	7.9E-14	95	144	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	96	139	IPR001005	SANT/Myb domain
CDD	cd00167	2.87E-5	97	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-6	97	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAANPWTRAE DMVLEDALAT FSGSLWDRLQ RIADILQRPL SDVYEHYRAL VRDISEIGSG 60 RVSTPNYYDH DRAESSGSQV AATAPPAKRK KNDWEVWSAY EHKLFLIGLE RYGKGDWRSI 120 SRNVVVTKTA AQVASHAQKF FIRQEKAAEG RKRPSIHDDN TVDMDLVAKL FPQWLDAFQT 180 QTQTQTQTQT QTQIGQTQTQ IGQQQLQTRI WQPLSQLPVQ QQFIQERG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520203.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520203.1	1e-168	PREDICTED: transcription factor DIVARICATA-like
STRING	XP_010520203.1	1e-167	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-49	MYB family protein