PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520372.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92151.2 Da    PI: 6.0296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.3e-182885457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  XP_010520372.1 28 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaKIEPKQIKVWFQNRRCRDKQ 85
                    5789***************************************************996 PP
2START145.64.6e-461643712203
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ ++      g  ++++l 
  XP_010520372.1 164 IAEETMAEFLSKATGTAVDWVQMPGMKPGPDSVGIFTISERCSGVAARACGLVSLEPT-KIAEILKDRQSWFRDCRSLKVFTFFPAGngSTIELV 257
                     799*******************************************************.7777788877*******9999999998888****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE.EEEEEEE-EE--SSXXHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh.skvtwvehvdlkgrlphwllrsl 184
                     +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++ +   p+   + ++vRae+lpSg+li+p+++g+ s +++v+h  l++++++ +lr+l
  XP_010520372.1 258 YMQTYAPTTLAPaRDFWTLRYTTSLDNGSLVVCERSLSGTGACPNdasTVQFVRAEMLPSGYLIRPCDDGGgSIIHIVDHLKLEAWSVPDVLRPL 352
                     **************************************9877777688899*******************99*********************** PP

                     HHHHHHHHHHHHHHHTXXX CS
           START 185 vksglaegaktwvatlqrq 203
                     ++s+ + +++++  +l++ 
  XP_010520372.1 353 YESSKVIAQRMTITALRYI 371
                     **********999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0782286IPR001356Homeobox domain
SuperFamilySSF466892.95E-162389IPR009057Homeodomain-like
SMARTSM003891.7E-152490IPR001356Homeobox domain
CDDcd000861.97E-152787No hitNo description
PfamPF000462.4E-152885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-182985IPR009057Homeodomain-like
CDDcd146862.43E-679118No hitNo description
PROSITE profilePS5084826.074154383IPR002913START domain
SuperFamilySSF559617.83E-32163376No hitNo description
Gene3DG3DSA:3.30.530.201.9E-19163354IPR023393START-like domain
SMARTSM002344.0E-32163374IPR002913START domain
PfamPF018521.1E-43164372IPR002913START domain
PfamPF086704.3E-47690835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MAMAVAVANH RERSSDSMDK HLDSTGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILAKIEPK QIKVWFQNRR CRDKQRKEAS RLQSVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VSANGHMKQQ LHTVQVTDAT CDSVVTTPQH LLRDVNSPSG LLSIAEETMA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFT ISERCSGVAA RACGLVSLEP TKIAEILKDR QSWFRDCRSL  240
KVFTFFPAGN GSTIELVYMQ TYAPTTLAPA RDFWTLRYTT SLDNGSLVVC ERSLSGTGAC  300
PNDASTVQFV RAEMLPSGYL IRPCDDGGGS IIHIVDHLKL EAWSVPDVLR PLYESSKVIA  360
QRMTITALRY IRQIAQETNG EVVYGLGRQP AVLRIFSQRL SRGFNDAVNG FSDDGWSVMH  420
CDGVEDIIVA VNSTNHSNDI SNSLTFLGGV LCAKASMLLQ DVPPAVLVRF LREHRSEWAD  480
FSVDAYSAAT LKAGTYSYPG MRPTRFTGSQ IIMPLGHTIE HEEMLEVVRL EGHSLVQEDA  540
FVSRDVHLLQ ICTGIDENVI GACSELVFAP INEMFPDDAP LVPSGFRVIP IDAKTGGGSD  600
LPTANRTLDL TSSLEVGPAS ENSSRSRSIL TIAFQFPFET DLRENVAIMA CQYVRSVISS  660
VQRVATAISP SGLIPSLGSK LSPGSTEAVT LAQWICQSYT HHLGSELLNP DSDDSVLKQL  720
WHHQDAILCC SLKPQPVFMF GNQAGLDMLE TTLVALQDVT LDNIFDESGR KALCSDFANL  780
MQQGFACMPA GRCVSTMGRQ VTYEKAVSWK VLASAPEEDT IVVHCLAFLF VNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520372.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520372.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1J3F1X70.0A0A1J3F1X7_NOCCA; Homeobox-leucine zipper protein REVOLUTA (Fragment)
TrEMBLA0A1J3F5L80.0A0A1J3F5L8_NOCCA; Homeobox-leucine zipper protein REVOLUTA (Fragment)
TrEMBLR0EUU00.0R0EUU0_9BRAS; Uncharacterized protein
STRINGXP_010520372.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]