PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520402.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 123aa MW: 14280.5 Da PI: 8.3728

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112	4e-35	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++ r+C++dC+l pyfp+++p++f++++ lFG+sn+ k+++++ ++ reda++s+ yeA r Pv+G++ vi++l+ q+ ++ ++l+ XP_010520402.1 7 QCAACKYQHRRCTSDCILPPYFPEDEPETFKMARNLFGVSNIKKMIRDVAPHLREDAVRSIKYEALFRSMFPVHGCCLVINELSYQIIEATKQLS 101 6********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_010520402.1 102 LIQAQ 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.913	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-33	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MKRKREQCAA CKYQHRRCTS DCILPPYFPE DEPETFKMAR NLFGVSNIKK MIRDVAPHLR 60 EDAVRSIKYE ALFRSMFPVH GCCLVINELS YQIIEATKQL SLIQAQVEAR FQGEPSDDGR 120 PFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	8	107	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	8	107	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520402.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520402.1	3e-88	PREDICTED: LOB domain-containing protein 25-like
TrEMBL	A0A0A0KXA1	1e-29	A0A0A0KXA1_CUCSA; Uncharacterized protein
STRING	XP_010520402.1	1e-87	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-30	LOB domain-containing protein 25