PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520708.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27753.6 Da    PI: 8.472
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n + rqvtfskR+ng+lKKA ELS+LCda+v+ iifss+g+l++y+s
  XP_010520708.1 10 RIDNATSRQVTFSKRKNGLLKKARELSILCDAQVCAIIFSSSGRLHDYAS 59
                    9***********************************************86 PP
2K-box83.35.5e-2880169998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++++   +q+e++kL++ i+ L + +R+l+Ge+++ Ls+++L++Le+qLe+slk++R++K++ll +qi+ l +k + + ++n++L+kk+
  XP_010520708.1  80 NHTSEITFWQREAEKLREHINHLNEYNRKLMGEEISGLSVNDLRNLENQLERSLKSVRARKEQLLADQIRVLTNKVNLVCQDNQELHKKV 169
                     7889999*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.333161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-32290IPR002100Transcription factor, MADS-box
CDDcd002651.82E-39269No hitNo description
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2581169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.77985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIVIQR IDNATSRQVT FSKRKNGLLK KARELSILCD AQVCAIIFSS SGRLHDYASS  60
SVKSVIERYN RMRAKDIEPN HTSEITFWQR EAEKLREHIN HLNEYNRKLM GEEISGLSVN  120
DLRNLENQLE RSLKSVRARK EQLLADQIRV LTNKVNLVCQ DNQELHKKVV LIGQENRDLK  180
TKVYELWDPN ESDCECKPDK LGYNLNLPVH PQLSHEELYS QERDQESELS MKLRLQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18198193MEF2 CHIMERA
6bz1_B2e-18198193MEF2 CHIMERA
6bz1_C2e-18198193MEF2 CHIMERA
6bz1_D2e-18198193MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520708.11e-175PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP499e-74MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2L0V2981e-83A0A2L0V298_HEVBR; MADS-box protein (Fragment)
STRINGXP_010520705.11e-173(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-72AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]