PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520846.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25704.2 Da    PI: 8.9203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri++++ rqvtfskRrng+lKKA+EL +LCdaev viifsstgkly++s+
  XP_010520846.1 10 RIDDTTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFSN 59
                    8***********************************************95 PP
2K-box82.49.9e-28801728100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     s  +++ + +q+e+  L++++++Lq+++R+++G++L+ L  k Lq+Le+qLe sl+ +R +K++ ++++i+el++k   ++een +L kk+ e
  XP_010520846.1  80 SDPASEVKFWQREVVALRQQLDSLQENHRQMMGQELSGLGAKGLQNLENQLEMSLRGVRMRKDQRMIDEIQELKRKGTFIHEENVELYKKVHE 172
                     3577889**********************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.216161IPR002100Transcription factor, MADS-box
CDDcd002651.04E-43274No hitNo description
SuperFamilySSF554551.57E-31285IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.92486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIVIRR IDDTTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGKLYDFSNS  60
SMKSTIDRYN KTKEENNQMS DPASEVKFWQ REVVALRQQL DSLQENHRQM MGQELSGLGA  120
KGLQNLENQL EMSLRGVRMR KDQRMIDEIQ ELKRKGTFIH EENVELYKKV HEERAKNGTN  180
MDSLLTNGLD IGDASSVPVQ QIYEPLTSGT KLGYYSLFPD IVPEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19174174MEF2C
5f28_B6e-19174174MEF2C
5f28_C6e-19174174MEF2C
5f28_D6e-19174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520846.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019056396.11e-122PREDICTED: agamous-like MADS-box protein AGL16
SwissprotA2RVQ54e-94AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A1Q3CYW61e-111A0A1Q3CYW6_CEPFO; SRF-TF domain-containing protein/K-box domain-containing protein
STRINGXP_010520846.11e-166(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-96AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]