PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520853.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 250aa MW: 29254 Da PI: 9.0998

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.4e-26	82	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GF vr+ + ++s +g++ r++ C+k+g++ +++k+ e+r+r ++r gCka++ vk+ek+gkw+vt++ +eHnH+l+ XP_010520853.1 82 NFYVDYARRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFSPNSQKSahLGGEKRPRHSSREGCKATILVKMEKSGKWVVTRFIKEHNHPLF 173 6*************************************99999997677899**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-25	82	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKLNETKTSP EDEIFQLYEP VDREIPHAKP CTKDHRSYYM MSTSLSSGLP SKNVDQFIQR 60 QNLDPFYRNH SNEFDSEDEA RNFYVDYARR LGFVVRMMQR RRSGIDGRTL ARRLGCNKQG 120 FSPNSQKSAH LGGEKRPRHS SREGCKATIL VKMEKSGKWV VTRFIKEHNH PLFLTASPYN 180 TVLADKDKQI EELEREIGHQ NQLCEAYRDR LLSLMNNVEQ HTEELSSRIR DIAENVKKIE 240 SELQIHNIRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520853.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520853.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2P2IUD6	1e-85	A0A2P2IUD6_RHIMU; Uncharacterized protein
STRING	XP_010520853.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	8e-79	FAR1 family protein