PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520926.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 158aa MW: 18359.1 Da PI: 10.7118

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.7e-20	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r +R ++ ++q+++Le+ F +n++p e + +LA++lgL+ rqV vWFqN+Ra+ k XP_010520926.1 9 RNRRKRLGQDQIRVLEKSFVMNKKPEPEIKIRLANQLGLPPRQVAVWFQNKRARFK 64 678999************************************************98 PP
2	HD-ZIP_I/II	94.3	1.3e-30	11	102	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++rl ++q+++LE+sF +++k epe K +la++Lgl prqvavWFqn+RAR+kt+ lE ++ ++ +++ + +++ rLe+ev+ L+eel++ XP_010520926.1 11 RRKRLGQDQIRVLEKSFVMNKKPEPEIKIRLANQLGLPPRQVAVWFQNKRARFKTRALELQHGSIMARLGTALADKLRLEREVKLLQEELEK 102 89**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-19	5	66	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.01	6	66	IPR001356	Homeobox domain
SMART	SM00389	6.5E-19	8	70	IPR001356	Homeobox domain
CDD	cd00086	5.36E-16	9	64	No hit	No description
Pfam	PF00046	1.2E-17	9	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-19	11	69	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MERSQTQTRN RRKRLGQDQI RVLEKSFVMN KKPEPEIKIR LANQLGLPPR QVAVWFQNKR 60 ARFKTRALEL QHGSIMARLG TALADKLRLE REVKLLQEEL EKSREQLSLL MTKHPVDGRS 120 CEDGHDQVME FDQLYACLVS SGHGSPSVSN WTRFQFSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520926.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520926.1	1e-114	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Swissprot	Q9FN29	3e-59	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A178UF51	1e-56	A0A178UF51_ARATH; HB52
STRING	XP_010520926.1	1e-114	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-61	homeobox protein 52