PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520931.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 1074aa    MW: 119329 Da    PI: 6.3342
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1185.94.4e-58191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl+++ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v++l+cyYah+e+n++fq
  XP_010520931.1  19 LSEaQHRWLRPSEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDMLHCYYAHGEDNSNFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rr+yw+Le+++ +iv+vhylevk
  XP_010520931.1 114 RRSYWMLEQDFMHIVFVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.9715141IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-8418136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.9E-5467549IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.6E-16471557IPR014756Immunoglobulin E-set
PfamPF018333.4E-4471545IPR002909IPT domain
PROSITE profilePS5029720.049654736IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-18654766IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.02E-18656765IPR020683Ankyrin repeat-containing domain
CDDcd002041.11E-14660763No hitNo description
PfamPF127964.8E-8661732IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.137671703IPR002110Ankyrin repeat
SMARTSM002482700671700IPR002110Ankyrin repeat
PROSITE profilePS5008811.487704736IPR002110Ankyrin repeat
SMARTSM002480.0028704733IPR002110Ankyrin repeat
SMARTSM000150.52879901IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.04E-7879930IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.675881909IPR000048IQ motif, EF-hand binding site
PfamPF006120.0025881900IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092902924IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304903927IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4905924IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MADRGSFGFG PRLDIEQLLS EAQHRWLRPS EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTIKEAHEK LKVGSVDMLH CYYAHGEDNS NFQRRSYWML  120
EQDFMHIVFV HYLEVKGNRM STGGIKENNS NSVNDTTSVH IGSTASPTST LSSLCEDADS  180
GDIHRASSSM QALSDPKIVT QIGDTQDASI LNSYYMSSFS GTREGWMSAP GAGVISQIRD  240
SQGSVGVPVW RAAFEDSTTN YHNLPCNDLL SQMPPSTTGL MLVPGMENAG QGGLIAADND  300
NKEHLRNPLQ NQVNWQIPGQ DNLPLPKWPM DLVSLAGMGD GTDLTVFEQR AHNSFETFSS  360
LLDTQRQQSI GNGIQFPLTS VESDYIPKLN PDDLQHETST SLMLPRKSLL SKEDSLKKVD  420
SFSRWVSKEL GEMEDLKMQS SGGIAWTTVE CETAAAGSSL SPSLPQDQRF TIIDFWPKWG  480
HIDSEVEVMV IGTFLMSKQE VTRYNWSCMF GEVEVPAEIL VDGVLCCHAP PHTVGQVPFY  540
VTCSDRFACS EVREFDFLPG FTKKLNATAV YGATTSEASL YTRFERLLAH RSPAHEHHIF  600
EGVGEKRKKI SKIMLIKDET ESLLPGTTQK DSTEQEAKGR VIRDLFEEKI YIWLIHKVTE  660
DGKGPNILDE EGQGVLHFAA ALGYDWAIKP ILAAGVSINF RDANGWTALH WAAFSGREQT  720
VAVLVSLGAD AGASTDPSPE FPLGKTAADL GSGNGHKGIS GFLAESSLTS YLEQLKMNES  780
KENSSADSCG AKVVQTVSER TATPMSYGDV PEALCLKDSL TAVCNATQAA DRIHQVFRMQ  840
SFQRKQLSQF AGDESDISDE LAVSFAAAKT GKPGHSEGVV HAAAVHIQKK YRGWKKRKEF  900
ILIRQRIVKI QAHVRGHQVR KQYRAIIWSV GILEKIILRW RRKGSGLRGF RREGGANAAK  960
QAKPGTSLTQ KEDDEYDFLK EGKKQTEERL KKALTRVKSM VQYPEARAQY RRLLTVVEGF  1020
RVTEEASNSG ANSNSNNNNN NAEEGDGEGK ADDDYLLDID SLLDDDTFMS IAFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hll_A7e-1165176762172Ankyrin(GAG)1D4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520931.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520931.10.0PREDICTED: calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLR0EUM40.0R0EUM4_9BRAS; Uncharacterized protein
STRINGXP_010520931.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]