PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521160.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21324.8 Da    PI: 9.227
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.93.4e-1047741542
                    HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42
                    kR+ g+lKK  EL vLC++ ++ ii+s 
  XP_010521160.1 47 KRKVGLLKKLTELTVLCGIPACAIIYSD 74
                    9*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00333184IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.7694374IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-1346118IPR002100Transcription factor, MADS-box
PfamPF003193.7E-84774IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRLLLSRSAS HFLANLSTLC KSLLSNQHTT LVNGKAPVKE MFIFIGKRKV GLLKKLTELT  60
VLCGIPACAI IYSDYSEEPE VWPNRREAHA ILDRLRRLPR AKQTKHMLDQ GDFVHQMIGK  120
LERELERERR KNSLIELGLV AFHNDLNDAD YSEELSVAAR LLEQRIKAVT ERIESSIRMS  180
VFADEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521160.11e-135PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
RefseqXP_010521161.11e-135PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
TrEMBLA0A087HQF03e-46A0A087HQF0_ARAAL; Uncharacterized protein
STRINGXP_010521160.11e-134(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-41AGAMOUS-like 87