PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521162.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 21109.5 Da PI: 8.8602

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31	3.3e-10	45	72	15	42
HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42 kR+ g+lKK EL vLC++ ++ ii+s XP_010521162.1 45 KRKVGLLKKLTELTVLCGIPACAIIYSD 72 9*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0033	29	82	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.769	41	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-14	44	116	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-8	45	72	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRLLLSRSAS HFLANLSTLC LLSNQHTTLV NGKAPVKEMF IFIGKRKVGL LKKLTELTVL 60 CGIPACAIIY SDYSEEPEVW PNRREAHAIL DRLRRLPRAK QTKHMLDQGD FVHQMIGKLE 120 RELERERRKN SLIELGLVAF HNDLNDADYS EELSVAARLL EQRIKAVTER IESSIRMSVF 180 ADEI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521162.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521162.1	1e-133	PREDICTED: agamous-like MADS-box protein AGL80 isoform X2
TrEMBL	A0A087HQF0	3e-46	A0A087HQF0_ARAAL; Uncharacterized protein
STRING	XP_010521160.1	1e-122	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	4e-41	AGAMOUS-like 87