PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521212.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 385aa MW: 43404.4 Da PI: 6.5258

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.2e-12	99	141	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++k +rr+++NReAAr+sR+RKka++++Lee +L++ ++L XP_010521212.1 99 ADKLQRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQEL 141 589****************************888887776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-4	97	157	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-8	97	144	No hit	No description
PROSITE profile	PS50217	9.312	99	143	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	100	141	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-6	101	144	No hit	No description
PROSITE pattern	PS00036	0	104	119	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-30	188	262	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MQTMSSSSPA QFASFRNMGI YEPFQQIAAW GNSFKADMNN NGNSNNNTSP NTASSTVIQV 60 ETRTNDNNNT NNINEVNYDF SHSPVEAEPS NDPSEGRVAD KLQRRLAQNR EAARKSRLRK 120 KAYVQQLEES RLKLSQLEQE LQRARQQGLY VRSSSDTSFL GPSGTMNTGI AAFEMEHAHW 180 LEEQNRRVSE IRTALQAHIS DIELRMLVDS CLNHYGNLFR MKADAAKADV FYLISGMWRT 240 STERFFQWIG GFRPSELLNV VMPYLEPLTD QQILEVRNLQ QSSQQAEDAL SQGIDKLQQG 300 LAESIVLEPA DSANYGAHMA AAMESLQGLE GFVNQADHLR QQTLQQMAKI LTTRQAARGL 360 LALGEYFHRL RALSSLWAAR PREPT

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MQTMSSSSPA QFASFRNMGI YEPFQQIAAW GNSFKADMNN NGNSNNNTSP NTASSTVIQV  60
ETRTNDNNNT NNINEVNYDF SHSPVEAEPS NDPSEGRVAD KLQRRLAQNR EAARKSRLRK  120
KAYVQQLEES RLKLSQLEQE LQRARQQGLY VRSSSDTSFL GPSGTMNTGI AAFEMEHAHW  180
LEEQNRRVSE IRTALQAHIS DIELRMLVDS CLNHYGNLFR MKADAAKADV FYLISGMWRT  240
STERFFQWIG GFRPSELLNV VMPYLEPLTD QQILEVRNLQ QSSQQAEDAL SQGIDKLQQG  300
LAESIVLEPA DSANYGAHMA AAMESLQGLE GFVNQADHLR QQTLQQMAKI LTTRQAARGL  360
LALGEYFHRL RALSSLWAAR PREPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521212.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521212.1	0.0	PREDICTED: transcription factor TGA7 isoform X1
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	D7KV55	0.0	D7KV55_ARALL; Predicted protein
STRING	XP_010521212.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]