PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521353.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 656aa    MW: 70208 Da    PI: 6.2047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.28.3e-1082816562374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+s+g++  a ++Lar+s++ +p+g++ q+l  +++ AL++rl+     +    +ps+ s     e+l +++l++e+sP++k++++
  XP_010521353.1 281 RQTIMEVATAISEGKTDIAAEILARVSQTLNPKGNSEQKLMEFMLLALRTRLNT----VE---NPSPVSVLYGNEHLGSTQLLYELSPCFKLGFM 368
                     6899*************************************************9....33...55555555599********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlv 182
                     +aN aIlea+  + ++H++Dfd+++G+Q+++Ll+ L++R+   ++pp ++iT+v +++ g       +e+++++g+ L+++ e+lg++++fnv+ 
  XP_010521353.1 369 AANLAILEATLDDGHLHVVDFDVGEGGQYVNLLHVLSTRRngiAPPPGVKITAVLDSHDGaavsgsGEERMKSVGDLLSQLGERLGITLSFNVVS 463
                     *************************************999676679********99777699999999*************************88 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     + rl +l+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vksl P+vv++veqe++ n+++Fl+r++ea+ yy al+ds+e+++ +
  XP_010521353.1 464 SVRLGNLSRESLGCDPDEPLAVNLAFKLFRVPDESVCTENPRDELLRRVKSLAPRVVTLVEQEMNANTAPFLARVSEACAYYGALLDSVESTVLS 558
                     88********************************************************************************************* PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsv 370
                      +++r+kvE+  l+r++vn vaceg +r+er+e ++kWr r+++aGF+  pls+++a++ ++ l++ +    g++v+e++g +++gW++r+L ++
  XP_010521353.1 559 SNSNRVKVEEG-LSRKLVNTVACEGVRRVERCEVFGKWRLRMGMAGFELTPLSQTIAESLRSRLSNGNrvHPGFTVKEDNGGVCFGWMGRTLAVA 652
                     ***********.*************************************************99988776789*********************** PP

            GRAS 371 SaWr 374
                     SaWr
  XP_010521353.1 653 SAWR 656
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.405254634IPR005202Transcription factor GRAS
PfamPF035142.9E-105281656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MASGFSGGGG PDFFAGGGRS MNSGSNNSNS NNPPLSQQSY RNQLPGIFHD QIGNRNSGVH  60
GFAGKRTLAD FQAAAQTQTQ FQNLAALNAL LLRSVKPRTF QNLPSPISPL PSQFDLSAND  120
INMLGGSSSS IQRFGLPILP HLRSNHLPQM SQPGLGLCCG GRMGFGPDNT ALQGVSCADP  180
VQNRAQPDSD SEKMMSRLKE LEKRLLDDDG DVQGDDAVSV ITNANSEWSE TIQSLVSPVM  240
SPNPTPTTNL NSNPVSSSPS SSSSSSSSSP SAASPISLYS RQTIMEVATA ISEGKTDIAA  300
EILARVSQTL NPKGNSEQKL MEFMLLALRT RLNTVENPSP VSVLYGNEHL GSTQLLYELS  360
PCFKLGFMAA NLAILEATLD DGHLHVVDFD VGEGGQYVNL LHVLSTRRNG IAPPPGVKIT  420
AVLDSHDGAA VSGSGEERMK SVGDLLSQLG ERLGITLSFN VVSSVRLGNL SRESLGCDPD  480
EPLAVNLAFK LFRVPDESVC TENPRDELLR RVKSLAPRVV TLVEQEMNAN TAPFLARVSE  540
ACAYYGALLD SVESTVLSSN SNRVKVEEGL SRKLVNTVAC EGVRRVERCE VFGKWRLRMG  600
MAGFELTPLS QTIAESLRSR LSNGNRVHPG FTVKEDNGGV CFGWMGRTLA VASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-352546562419Protein SHORT-ROOT
5b3h_E2e-352546562419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521353.10.0PREDICTED: scarecrow-like protein 8 isoform X1
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4LHQ50.0V4LHQ5_EUTSA; Uncharacterized protein
STRINGXP_010521354.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8