PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521473.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25233.8 Da    PI: 10.1161
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-1965118457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq + Le  F +++++  e++e++A++lgL+ rqV vWFqNrRa++k+
  XP_010521473.1  65 KRKLSEEQAKLLELSFVREQKLESERKERIAAELGLEPRQVAVWFQNRRARWKN 118
                     4589************************************************95 PP
2HD-ZIP_I/II109.91.7e-3564155293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eq+klLE sF +e+kLe+erK+++a eLgl+prqvavWFqnrRAR+k+k+lE+d+ +L++ +d ++ ++++L+++v +L+e+l+e
  XP_010521473.1  64 RKRKLSEEQAKLLELSFVREQKLESERKERIAAELGLEPRQVAVWFQNRRARWKNKKLEEDFFKLQTLHDDVVLQKCHLQSQVVKLKEQLSE 155
                     8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.50359119IPR001356Homeobox domain
SMARTSM003891.5E-1762123IPR001356Homeobox domain
SuperFamilySSF466893.93E-1762122IPR009057Homeodomain-like
CDDcd000861.28E-1564120No hitNo description
PfamPF000463.8E-1665118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1866124IPR009057Homeodomain-like
PRINTSPR000311.0E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000311.0E-599115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MYHLHNLDEL LMFMPHEYPS GSSIQTPPLH GETKPLVIRR RRRMRRRKRG SSPSSSEAEM  60
VGSRKRKLSE EQAKLLELSF VREQKLESER KERIAAELGL EPRQVAVWFQ NRRARWKNKK  120
LEEDFFKLQT LHDDVVLQKC HLQSQVVKLK EQLSEAKNKI RQLAERSGGT STNKSSSSSP  180
SGNFVPENDY DIDMFYMSEN NYILQHMEWI PLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RRRRRMRR
23848RRRRRMRRRKR
34047RRRMRRRK
44146RRMRRR
54666RKRGSSPSSSEAEMVGSRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521473.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521473.11e-158PREDICTED: homeobox-leucine zipper protein ATHB-53-like
SwissprotQ9LVR01e-50ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A0D2TIR89e-55A0A0D2TIR8_GOSRA; Uncharacterized protein
STRINGXP_010521473.11e-158(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.13e-50homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]