PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521515.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 754aa    MW: 84747.4 Da    PI: 6.8168
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-2194149156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_010521515.1  94 RKKYHRHTADQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 149
                     7999************************************************9877 PP
2START220.84.3e-692664912206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     +a++a++el+k+a+a+ep+W +s+    e++n+de+l++f+  +        +s+ea+r++g+v+m+  +l+ +++d++ qW+e+++    kaet
  XP_010521515.1 266 MANRATDELQKMAKAGEPLWIRSVetghEILNYDEYLKEFPLPQLsssssskKSIEASREVGIVFMDIQKLLHSFMDVN-QWKEMFPcmisKAET 359
                     6899************************************987779999******************************.*************** PP

                     EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     ++ +++g       ga+qlm+ e q+l+p+v+ R+++fvR +rql+ ++w+ivdvS+d+ +++  ++s+v+++++pSg++ie+ksngh+kvtwve
  XP_010521515.1 360 VDIVRQGegpnginGAIQLMFGEIQMLTPVVAsREVYFVRACRQLSPDKWAIVDVSIDNVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVE 453
                     **************************************************************98.9***************************** PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     h +++++++h l+rs+v+sgla+ga++w atlq qce+
  XP_010521515.1 454 HLECQKSTVHTLYRSVVNSGLAFGARHWIATLQLQCER 491
                     ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-2080152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2281145IPR009057Homeodomain-like
PROSITE profilePS5007117.7591151IPR001356Homeobox domain
SMARTSM003895.4E-1893155IPR001356Homeobox domain
PfamPF000462.1E-1894149IPR001356Homeobox domain
CDDcd000862.41E-1698149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084840.58256494IPR002913START domain
SuperFamilySSF559619.89E-35258491No hitNo description
CDDcd088751.63E-107260490No hitNo description
SMARTSM002344.6E-69265491IPR002913START domain
PfamPF018529.5E-58266491IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-5311486IPR023393START-like domain
SuperFamilySSF559615.49E-13534714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MAVDMSNPPT KDFLSSPALS LSLAGIFRDA ASGSKNAEEE EEIDFYRDGG GRNQTVEISS  60
ENSVPTRSRS EDDFEGDDHD DDDDDPTKNK KKKRKKYHRH TADQIRHMEA LFKETPHPDE  120
KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KSELEKLRDE NKAMRESIAK  180
ACCPNCGLPS STSTAPDDHH LRLEYAKLKA EVERLRASTG KYSQNQQASA STTTSSSDDH  240
HEQRLVSSLD LYTGIFGLDK SRILEMANRA TDELQKMAKA GEPLWIRSVE TGHEILNYDE  300
YLKEFPLPQL SSSSSSKKSI EASREVGIVF MDIQKLLHSF MDVNQWKEMF PCMISKAETV  360
DIVRQGEGPN GINGAIQLMF GEIQMLTPVV ASREVYFVRA CRQLSPDKWA IVDVSIDNVE  420
DNIDASLVKC RKRPSGCIIE DKSNGHCKVT WVEHLECQKS TVHTLYRSVV NSGLAFGARH  480
WIATLQLQCE RLVFFMATNV PTKDSIGIYT HTHIHYIYIY SRHWRGGFYR AIGASSYHQW  540
SRITTKTGED IRVSSRKNLN DPGEPLGVIV CAASSLWLPV PPTVLFDFLR DETRRHEWDI  600
LTNGAHVQSI ASLSKGQDRG NSVTVHAVKT REKSMWVLQD SCTNSYESAV IYAPVDINAT  660
QVAMGGRDPS DIQILPSGFS IIPDGEESRP LVIRSSRQDE KNSEGGSLLT VALQSPVVHA  720
SISAKPTRDS VESVTAIVSI ILQNIKRCLR IEDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKKKRK
28995KKKKRKK
39195KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521515.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521515.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLD0PSG20.0D0PSG2_BRANA; GL2a
STRINGXP_010521515.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]