PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521560.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 365aa    MW: 41570.4 Da    PI: 7.5902
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35831742102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+ +++++sw e++++fvv+ + +f++++Lp+yFkh+nf+SFvRQLn+YgFkkv +++         weF+++ F+kg k+l+++
  XP_010521560.1  83 FLTKTYELVDDPITDHIVSWGEDQTTFVVWRPPDFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANEFFRKGAKHLMCE 168
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_010521560.1 169 IQRRKT 174
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.7E-5679172IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.75E-3279172IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3779172IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3083172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1983106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-19121133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340122146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-19134146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTSDHQEGVD PTQRFLSRRS RSGKVDHGQD HDGNNVNKNG GMHSSSSSSS SSSSSSSAAE  60
MAMMMMMMVG GGGDGQKGDP APFLTKTYEL VDDPITDHIV SWGEDQTTFV VWRPPDFSRD  120
LLPNYFKHNN FSSFVRQLNT YGFKKVVTDR WEFANEFFRK GAKHLMCEIQ RRKTPQNHNQ  180
IYNIHDHQFH HHHHNHLIPP PLPSPFFQQD HHHHHHHAHS DHHQSQLLNS SKPPSDDILT  240
ALSEDNQRLL RKNRMLLSEL THMKNLYNDI VYFIQNHVKP VPSSSDQITF KPAEHHHGSV  300
QAIPKIRELD SLRVQADENV DPLAGVPKIG SRLMNTMNSN AEDPSCTVKL FGVSLSGKKR  360
LQQEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-206517412131Heat shock factor protein 1
5d5v_B1e-206517412131Heat shock factor protein 1
5d5v_D1e-206517412131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521560.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6355e-84HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A151SI681e-100A0A151SI68_CAJCA; Heat stress transcription factor B-4
STRINGXP_010521560.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-59heat shock transcription factor B4