PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521607.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family FAR1
Protein Properties Length: 873aa    MW: 98719.6 Da    PI: 6.676
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.25.6e-1364135290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y+ YA++vGF+ +  +    k++g++ +r+fvCs +  ++++  +             +C+a+++++++ ++kw+vtk+++eH+H l+
  XP_010521607.1  64 LYDVYARRVGFTSKPGS----KTDGSMNSREFVCSSSKGSKKRPAE-------------SCDAMIRIEMKGQDKWVVTKFVKEHSHGLM 135
                     69*********988775....5688999******987666666555.............8**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-964135IPR004330FAR1 DNA binding domain
PfamPF105511.5E-24270361IPR018289MULE transposase domain
PROSITE profilePS5096610.917548584IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-9554582IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-8559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MDDHLVDETL EMEHHGVGDD GDAEPSDSGE PTNVENSSGV RDEDGIVEPC LGMEFDSESA  60
AKSLYDVYAR RVGFTSKPGS KTDGSMNSRE FVCSSSKGSK KRPAESCDAM IRIEMKGQDK  120
WVVTKFVKEH SHGLMSPNTL HCLRPRRHFA NSEKCMPESF QGTANVPTGT MYVSMDGNRT  180
SLESNSRGAR NSHRDSTKNM GPMNYRVMPT NRKRTLGRDA HNLLEYFKRM QAENPGFFYA  240
MQLDEDGQMT NVFWADSRSR TAYGHFGDAV NLDTRYRYNQ FRVPFTPLTG VNHHGQMILF  300
GCALMLDETE ASFTWLLKTF LTAMNDRQPV SLVTDQDRAI QIAVAQVFPE TRHCINKWDV  360
LREGQEKLAH ACLAYPSFQV ELYNCINFTE TIEEFELSWT SIIQKYDLGR HEWLNSIYNA  420
RAQWVPVYFR DSFFAAVSPA QGYPGSFFDG YVHQQTTLPM FFRQYERAME SWFEREIEAD  480
LDTINSPPVL KTPSPMENQA ANLYTRTIFA KFQEELVETF AYTANRIDGN GTTSTFRVAK  540
FENDNKAYIV TFDYPEMRAN CSCRMFEHLG ILCRHVLTVF TVTNILTLPP HYILRRWTRN  600
AKSGAGADEH CGENDHESMT RRYNRLCREA IKYAEEGAIA VETYNVALGA LKECGKKVAA  660
AKKNVVKVTQ SISQAGGLVS DDKKASLSAA DSTPLLWPRH DEMIRRFNLN DGGAMAQSVA  720
DLNLPRMAPV SLHRDDAAPD NMAVLPHLKS MTWVMESKNT TLGGKVAVIN LKLHDYSKFP  780
TSEMEVKFQL SKVTLEPMLR SMAYISEQLS APANRVAVIN LKLQDTETTS GESEVKFQVS  840
RDTLGAMLRS MAYIREQLSL VGEPQAKKQR KVM
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521607.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521607.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLR0HMV50.0R0HMV5_9BRAS; Uncharacterized protein
STRINGXP_010521607.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]