PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521623.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 186aa MW: 20779.7 Da PI: 9.3692

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	241.2	2.2e-74	2	166	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ sse+vCyv CnfCntilav+vP++slf++vtvrCGhCt+lls+n+ + ++++ h d +++++ + e ++ +k++ +st+ XP_010521623.1 2 SLDLSSERVCYVSCNFCNTILAVNVPYASLFTIVTVRCGHCTNLLSLNMGASLHQISPPVHQDLQFHKQHITITSPEPRKECGSSSKSTISSTTS 96 56789*******************************************999999888887777766544433333333222222222222222 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s e+ d+e+pr+pp+ PPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl XP_010521623.1 97 S----FESVDREAPRMPPIRPPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 166 2....367899***999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.7E-72	6	166	IPR006780	YABBY protein
SuperFamily	SSF47095	8.51E-8	111	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.9E-5	115	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSLDLSSERV CYVSCNFCNT ILAVNVPYAS LFTIVTVRCG HCTNLLSLNM GASLHQISPP 60 VHQDLQFHKQ HITITSPEPR KECGSSSKST ISSTTSSFES VDREAPRMPP IRPPPEKRQR 120 VPSAYNRFIK EEIQRIKASN PEISHREAFS TAAKNWAHFP HIHFGLKLDG NKQGKQLDQA 180 VAGQKL

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521623.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521623.1	1e-138	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-104	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J3F0Q6	1e-105	A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2
STRING	XP_010521623.1	1e-137	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-84	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]