PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521663.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 351aa    MW: 39466.6 Da    PI: 7.9717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05194213120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_010521663.1 194 FACSICSKTFNRYNNMQMHM 213
                     78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-6174217No hitNo description
PROSITE profilePS5015710.45194221IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5194213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SMARTSM00355190242274IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.64E-5263299No hitNo description
Gene3DG3DSA:3.30.160.608.2E-4265299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130279299IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSLWNSHGRG LSFHHQAPSF IEWLKPSSSS CSSYPSSLPS SLLSLVTKQI LLGDYQTNMS  60
ERSLFYQSQE ESEGGKIQCL PLLNKLMEKT PESNQHRNIK EAFEVEGGKV TVALHIGLPN  120
YDRNIVSEDD SDTTIKKEDG GDGDGDDGDD DDDDGVTMKR RKIMSFESDL DLDVSGKRFW  180
IPSPAQILIG PTLFACSICS KTFNRYNNMQ MHMWGHGSEF RKGPESLKGT TQPAAILRLP  240
CYCCAVGCKN NINHPRARPL KDFRTLQTHY KRKHGSKPFS CRKCGKALAV KGDWRTHEKN  300
CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSLLVDG FEEEKECVTA E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521663.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-151ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D3C8H01e-150A0A0D3C8H0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EC831e-150A0A3P6EC83_BRAOL; Uncharacterized protein
STRINGXP_010521663.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-149WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]