PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521775.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 225aa MW: 24847.3 Da PI: 4.8633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.8e-43	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_010521775.1 57 PCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRNDAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSELQAQLA 151 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_010521775.1 152 KAQVE 156 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.153	56	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-42	57	154	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MLKMEINGEN STETAAAAAV TAIPSPSPTS SPPLPVSPQT QTQTQTQPQP QVVIMSPCAA 60 CKILRRRCAE KCVLAPYFPP TEPTKFTIAH RVFGASNIIK FLQELPESQR NDAVNSMVYE 120 AGARIRDPVY GCAGAIYHLQ RQVSELQAQL AKAQVEIVGM QLQRANLLAL ICKMDRPQGQ 180 EHDITMTMPF ESSFESGDDE SIHDLGFLDD INSNSSMLWW DPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-42	56	158	10	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-42	56	158	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521775.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521775.1	1e-169	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9SK08	6e-99	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	4e-98	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397ZLR9	4e-98	A0A397ZLR9_BRACM; Uncharacterized protein
STRING	XP_010521775.1	1e-168	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-93	LOB domain-containing protein 1