PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521862.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 734aa MW: 82704.2 Da PI: 5.2444

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.8	1.6e-109	357	731	4	373
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlt 97 Ll cA+a+s+gd+ a+ lL ++++++sp gd+ qRla++f+++L+arl +s+ + ++ + ++++++ ++ l+a+k++ ++P+ ++ ++ XP_010521862.1 357 RLLLCAQAISTGDKGTAHDLLRQIKQHSSPLGDASQRLAHCFANGLEARLKGSTGPVIQSYyDSLASKKTTAADILKAYKVYLSACPFKTLIYFF 451 6999**********************************************6666555553777777777******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++I++ ++ + +Hi+Df+i +G+QWp ++q +a+R+ gp +lRiTg++ p++g +e+++etg+rLa++++++gvpfe+n+++++++++++ XP_010521862.1 452 SNKMIVDIAKDAPVLHIVDFGILYGFQWPMFIQYIANRKCGPSKLRITGIELPQPGfrPAERIHETGRRLAEYCDRFGVPFEYNAIASNNWDTIR 546 ***************************************************9**************************999** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +e+L+++p+E+laVn+ ++ ++l de++ ++ +rd vL+l++s++P +++++ + + n++ F +rf e+l +ysalfd+++++lpres+er XP_010521862.1 547 IEDLKLRPDEVLAVNCGMRFKNLQDETAGEDNcPRDVVLRLIRSMNPYIFTHSIINGSFNAPFFTTRFKETLFHYSALFDMFDSTLPRESRERLR 641 ***********************9999999********************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 Ere+ gre++nv+acegaer+er et+++W+ r+++aGF++ p+++k+++ + l++ + + + v+e ++++++gWk+r L++ S+W XP_010521862.1 642 FEREFYGREAMNVIACEGAERVERPETYKQWQVRMGRAGFRQKPVETKMVECFRGKLKRWGyHKDFVVDEGNNWFLQGWKGRILYASSCW 731 *******************************************************999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.922	328	711	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-107	357	731	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MMESNFSAVL SVVKGFLDHY DGNMLPNPIP DPFPDVGFGV PSSSDFNRPH NFDTDLPSDW 60 TQTQDQYSPS SGDEDLANPL LNYVSQILME ESIEDQPSMF YDSLALQRTE EMLQRVIRDS 120 SQVQSASPYN SIASMDSGVL WIDNLDSSVA SVSFDSGASS DTVVVTDPPG VSSGFNPNVA 180 LPGSNRLTGS SDGSIGPSVN ELLVRSMFSD VESIMQFKKG LEEAKKFLPN SDQLIIHQET 240 EKSFPDWDEE ADPGMVRVKV ETGLDSPPDP LRVRKNREGN ELDLEESRSR KQSATNVEDE 300 NVTEMFDKVL LLDAKLDPQT IIESGKTADG SSGQGKAQAK KEGRKKKRNE TVDFHTRLLL 360 CAQAISTGDK GTAHDLLRQI KQHSSPLGDA SQRLAHCFAN GLEARLKGST GPVIQSYYDS 420 LASKKTTAAD ILKAYKVYLS ACPFKTLIYF FSNKMIVDIA KDAPVLHIVD FGILYGFQWP 480 MFIQYIANRK CGPSKLRITG IELPQPGFRP AERIHETGRR LAEYCDRFGV PFEYNAIASN 540 NWDTIRIEDL KLRPDEVLAV NCGMRFKNLQ DETAGEDNCP RDVVLRLIRS MNPYIFTHSI 600 INGSFNAPFF TTRFKETLFH YSALFDMFDS TLPRESRERL RFEREFYGRE AMNVIACEGA 660 ERVERPETYK QWQVRMGRAG FRQKPVETKM VECFRGKLKR WGYHKDFVVD EGNNWFLQGW 720 KGRILYASSC WVPA

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MMESNFSAVL SVVKGFLDHY DGNMLPNPIP DPFPDVGFGV PSSSDFNRPH NFDTDLPSDW  60
TQTQDQYSPS SGDEDLANPL LNYVSQILME ESIEDQPSMF YDSLALQRTE EMLQRVIRDS  120
SQVQSASPYN SIASMDSGVL WIDNLDSSVA SVSFDSGASS DTVVVTDPPG VSSGFNPNVA  180
LPGSNRLTGS SDGSIGPSVN ELLVRSMFSD VESIMQFKKG LEEAKKFLPN SDQLIIHQET  240
EKSFPDWDEE ADPGMVRVKV ETGLDSPPDP LRVRKNREGN ELDLEESRSR KQSATNVEDE  300
NVTEMFDKVL LLDAKLDPQT IIESGKTADG SSGQGKAQAK KEGRKKKRNE TVDFHTRLLL  360
CAQAISTGDK GTAHDLLRQI KQHSSPLGDA SQRLAHCFAN GLEARLKGST GPVIQSYYDS  420
LASKKTTAAD ILKAYKVYLS ACPFKTLIYF FSNKMIVDIA KDAPVLHIVD FGILYGFQWP  480
MFIQYIANRK CGPSKLRITG IELPQPGFRP AERIHETGRR LAEYCDRFGV PFEYNAIASN  540
NWDTIRIEDL KLRPDEVLAV NCGMRFKNLQ DETAGEDNCP RDVVLRLIRS MNPYIFTHSI  600
INGSFNAPFF TTRFKETLFH YSALFDMFDS TLPRESRERL RFEREFYGRE AMNVIACEGA  660
ERVERPETYK QWQVRMGRAG FRQKPVETKM VECFRGKLKR WGYHKDFVVD EGNNWFLQGW  720
KGRILYASSC WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-46	358	731	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521862.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521862.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	V4KEH5	0.0	V4KEH5_EUTSA; Uncharacterized protein
STRING	XP_010521862.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein