PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521993.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 173aa MW: 19081.7 Da PI: 6.8938

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.2e-44	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da++slv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_010521993.1 9 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRVDAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLA 103 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010521993.1 104 VAQAE 108 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGSAGSSPC ASCKLLRRRC AKDCIFAPYF PPDDPHKFAI VHKVFGASNV SKMLQELPVH 60 QRVDAVNSLV FEANARVRDP VYGCVGAISY LQNQVSQLQM QLAVAQAEIL CIQMQNEPTV 120 QSQVLVDQDD KSLWYNNNSH LGYAVSGQFS TNLASSSSIM QMQDPLKQES LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	7	119	9	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	7	119	9	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521993.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521993.1	1e-127	PREDICTED: LOB domain-containing protein 12 isoform X1
Refseq	XP_019056596.1	1e-127	PREDICTED: LOB domain-containing protein 12 isoform X2
Swissprot	Q8LBW3	6e-95	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A291LQZ8	3e-93	A0A291LQZ8_BRARR; Transcription factor LBD12b
TrEMBL	M4E1Y0	1e-93	M4E1Y0_BRARP; Uncharacterized protein
STRING	XP_010521993.1	1e-127	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-89	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]