PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522373.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 409aa    MW: 45263.8 Da    PI: 8.3201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.1e-114470127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+f++rtG C yG++C+++H+p
  XP_010522373.1 44 PGERDCPFYLRTGLCGYGSNCRYHHPP 70
                    5789*********************97 PP
2zf-CCCH36.58.2e-1288113227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C +f++tGtCkyG++Ck++H++
  XP_010522373.1  88 GYPDCEYFLKTGTCKYGPTCKYHHPK 113
                     5899********************96 PP
3zf-CCCH36.77.3e-12136158527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtGtC++G +CkF+H++
  XP_010522373.1 136 SCPYYLRTGTCRFGVSCKFHHPQ 158
                     5********************97 PP
4zf-CCCH37.73.5e-12263287327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ tGtCkyGd C+++H++
  XP_010522373.1 263 QPECRFFMSTGTCKYGDDCRYNHPK 287
                     799********************96 PP
5zf-CCCH36.58.4e-12307332126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++f+ +G+Ck+G++CkF H+
  XP_010522373.1 307 PGQPACSNFMTYGFCKFGPNCKFDHS 332
                     57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-64370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4464371IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-84570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-54769IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44968IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62486114IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-988113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-592112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6130158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037131159IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5133158IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5136157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.859260288IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10263287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6266287IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-7306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535306334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6308335IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9308332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSETQQDQSS IVSNRSSVKI EDAIRRIKLN EGSDAQSGPY PDRPGERDCP FYLRTGLCGY  60
GSNCRYHHPP YFSQATIYYK DELPERVGYP DCEYFLKTGT CKYGPTCKYH HPKDRNGAGP  120
VLFNVLGFPM RQSEKSCPYY LRTGTCRFGV SCKFHHPQPV NGPSAAYGVS SFSSVGFPYL  180
GGLTMMSLPP ATYGAVPRAQ VPQAYVPFMV SPSHGILPPQ GWATYSVTPN NIYNVKDQPD  240
SNSCASVPVA VTSNHSLPER RDQPECRFFM STGTCKYGDD CRYNHPKERI SQSPPNPLSP  300
IVLPSRPGQP ACSNFMTYGF CKFGPNCKFD HSLPPYPYNM ALTMSHLPAT YASPVSTHPR  360
MAPPSRSDSP PLSDTKPAEK IRNPKETEKS GLNNEQVNSE VQVSSENSS
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522373.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010522373.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]