PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010522399.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 427aa MW: 47394.7 Da PI: 9.5606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010522399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54	3.1e-17	172	221	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ + K +Ka+ L +++eYI+ Lq XP_010522399.1 172 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DHKRDKASFLLEVIEYIQFLQ 221 889***********************9....89****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-23	167	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-19	168	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.888	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-15	172	224	No hit	No description
Pfam	PF00010	9.2E-15	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-13	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MISHIPYFHH RIPKPEVSPV FTVAQASGSE RNTDENSNCS SYAPGGFTLW EESARKKGQT 60 RKENVGERAS MLDAASAGQW PGPERQSQSS TTTNNRSNFS SRSSSQVSGL KSQSFMDMIR 120 SAKGSSQDND GDDDEEEFIM KKESPSTSQK VDLRVRVDGK STGNDQKPNT PRSKHSATEQ 180 RRRSKINDRF QMLRQLIPNS DHKRDKASFL LEVIEYIQFL QEKVNKYEGC YQGWNPEPGK 240 LMNWRNNSQH PAEGTVAFGP PKLEEKNSVI AMTQTAMDQQ CPFPMSIKHS SFYAAGPTVL 300 TGSPVSQFQT RVVSEERPKS GSSWEVVASE SGKPKGEEGD LVIGGGTISI STVYSQGLMK 360 RLKEALKSSG VDMSKASISV QIELAKQRPA PSTLMDEEVG GKRPRTETGE EEGHSNRNRK 420 KLRPDRI

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MISHIPYFHH RIPKPEVSPV FTVAQASGSE RNTDENSNCS SYAPGGFTLW EESARKKGQT  60
RKENVGERAS MLDAASAGQW PGPERQSQSS TTTNNRSNFS SRSSSQVSGL KSQSFMDMIR  120
SAKGSSQDND GDDDEEEFIM KKESPSTSQK VDLRVRVDGK STGNDQKPNT PRSKHSATEQ  180
RRRSKINDRF QMLRQLIPNS DHKRDKASFL LEVIEYIQFL QEKVNKYEGC YQGWNPEPGK  240
LMNWRNNSQH PAEGTVAFGP PKLEEKNSVI AMTQTAMDQQ CPFPMSIKHS SFYAAGPTVL  300
TGSPVSQFQT RVVSEERPKS GSSWEVVASE SGKPKGEEGD LVIGGGTISI STVYSQGLMK  360
RLKEALKSSG VDMSKASISV QIELAKQRPA PSTLMDEEVG GKRPRTETGE EEGHSNRNRK  420
KLRPDRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	422	RNRKKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010522399.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010522399.1	0.0	PREDICTED: transcription factor BIM1-like isoform X3
Swissprot	Q9LEZ3	1e-131	BIM1_ARATH; Transcription factor BIM1
TrEMBL	R0FDU1	1e-138	R0FDU1_9BRAS; Uncharacterized protein
STRING	XP_010522381.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-129	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]