PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522499.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 264aa    MW: 30381.7 Da    PI: 9.8176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH215.9e-07113162155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+r h ++Er RR++ +++++ L +llP       +K +K +i++ A + I +Lq
  XP_010522499.1 113 RCRRHMMNERVRREKQRQSYFALHSLLPAG-----TKKDKNSIVQSALNRIEELQ 162
                     6788************************97.....7999999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.96E-8101166No hitNo description
SuperFamilySSF474595.63E-10111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.081112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-4113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-7116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-6118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MELKLEDSQK QRKRRKKKDQ MDGHHLFSPD LVFPEEDTFW YEVVGEETNA SVAKQSAFRP  60
YTRNPERGSP DKPAGGGGGT TAEAEKNLKK RMVDLMRSNW EEKRKAAAPA RERCRRHMMN  120
ERVRREKQRQ SYFALHSLLP AGTKKDKNSI VQSALNRIEE LQREKKELER RIQMMENGKG  180
KKVELKVEDP VSGADSMLET LTCLKALGAK PITIQAEFSP QEFSTVMSVE TQIAGDEVEK  240
TVEKTLQEAE WKLLFLPQPP FSKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117RKRRKKK
21118RKRRKKKD
31318RRKKKD
4109117ARERCRRHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522499.10.0PREDICTED: transcription factor bHLH92 isoform X2
SwissprotQ9FIX53e-75BH092_ARATH; Transcription factor bHLH92
TrEMBLD7MXG45e-77D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGXP_010522498.11e-168(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.16e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]