PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522761.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 310aa    MW: 32879.3 Da    PI: 5.6434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.5e-09157201554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++  ++v+Y+k L
  XP_010522761.1 157 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEVVDYVKFL 201
                     99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-15150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.948152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASGNPHEAP SDQPPSDDFF EQILGLPNFA SPSTAGLPGA DGGLVGPPPP MLLQLGSGDE  60
ASHMAAIGGG SAGGFHGEIF PLGLSLEQGK GPGFLKPDEP HGSGKRFPDE IVDNRCSSMK  120
PVFLGQPMPQ PAPTAPHPPS AIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP  180
TVNKTDRAAM IDEVVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEEEGSEGG  240
RTQPAWEKWS NDGTERQVAK LMEENVGAAM QFLQSKALCI MPISLAMAIY HSQPASDSPS  300
GIKPETNPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522761.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-163UNE12_ARATH; Transcription factor UNE12
TrEMBLV4L2M51e-166V4L2M5_EUTSA; Uncharacterized protein
STRINGXP_010522761.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]