PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522859.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 313aa    MW: 35652.1 Da    PI: 9.7299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-121722121055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +rRR++iN+++  L+ l+P++        +Ka++L kAv+Y+ksLq
  XP_010522859.1 172 KRRRAKINQKIRLLQNLIPNC-----NEADKASVLDKAVDYMKSLQ 212
                     9*******************8.....589****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.592162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15172220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15172239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10172212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.51E-11172216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFDQDIVGLR RRMDRLHDLK MSEMIKLGAS NKKMAETPSD YHNHKEDMMM IMCEKFQTGP  60
QVVPRLEDTQ EFTVEIRDES KISTKGFHDQ EQENSTKDAE FTVPDEHSET GRGRSRRGPR  120
KRYGNLRRCI GSSSDEFVEE TSDGFTREVP SLPRKSSKRK RVVEPRTSSS VKRRRAKINQ  180
KIRLLQNLIP NCNEADKASV LDKAVDYMKS LQLQLQVMSM GIRPYMLPMM SPMAVAMAMS  240
PVHCNIPSNA AVAVAAPFIT PFKSPLSTLL LNLSNHHAPI SPACFQCPLG FFVRSSLGLS  300
PYHNELYDRL RFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158174RKRVVEPRTSSSVKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522859.10.0PREDICTED: transcription factor PIF3
STRINGXP_010522859.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140151624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.11e-24bHLH family protein