PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522874.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 471aa    MW: 53129.2 Da    PI: 5.9544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.41.8e-4251343128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +G+rFhPtd+el+++yL+ k+ g++   ++++++e+d +k++PwdL+  +k+++++  wyfFs+rd+ ++++k ++r+t+sg+Wkatg d+++++
  XP_010522874.1   5 VGYRFHPTDDELITYYLNSKIMGNNtWLVHQAMTEIDFCKFDPWDLHlqSKISSNDPVWYFFSPRDNPNPKKKGTKRTTNSGFWKATGVDRKIKR 99 
                     7**********************994334466**************85347777888************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k ++ ++g+kktLvfy+gr p+g++t  vmhey+ 
  XP_010522874.1 100 KgGSGEIGVKKTLVFYSGRVPNGSRTPYVMHEYHS 134
                     977778***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.4873152IPR003441NAC domain
SuperFamilySSF1019417.32E-444152IPR003441NAC domain
PfamPF023657.2E-255133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDRLVGYRFH PTDDELITYY LNSKIMGNNT WLVHQAMTEI DFCKFDPWDL HLQSKISSND  60
PVWYFFSPRD NPNPKKKGTK RTTNSGFWKA TGVDRKIKRK GGSGEIGVKK TLVFYSGRVP  120
NGSRTPYVMH EYHSSVLSPG QNTYVICKVK FKGDAADAPS GNGSEPSYSL ASNLNDIEMS  180
TGSGFNCQGQ VQVQGTPESF YGITENDLVM PLNDQTGLSL WEVQNLEKFG GNPNVELQTP  240
YWNQNENESN YSLMNLNQED WKYLFDDDTE QAMYKHVQED HNDYRPQEAL TGVCVDSSSD  300
SDAESVSAKS YQETSSPVDT VGSSNGNHQT DLDDDVHVEE MLSSLDHKEL VATTTSEKAG  360
PSRPQRRYNN GPIRFQLPSK QETLGVRFQV KKVKERASVA AVPREMTVWK VAQDTNKAAS  420
VVVAREKKGW FIWHDAIEKR REHPPPYVYL VNMVVGIFLL VSLLYAIISV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-31613318139Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522874.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522874.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
STRINGXP_010522874.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-100NAC domain containing protein 69