PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522878.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 363aa    MW: 40597 Da    PI: 5.2225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13156207155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ L+ l+P++   + ++ + a+i   A++++k+L+
  XP_010522878.1 156 QRMTHIAIERNRRRQMNEHLNSLKCLIPQS---YLQRGDQASIIGGAIDFVKQLE 207
                     79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.50E-11154211No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15154219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.71155206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8161212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MERFHTPNDS CLMDADFSEA GCSQHELLLS SGSFRFSDEA EEEAAVHVQF SDAATIEDSI  60
PFLRMLKSVK PTTFLPFKSE PNILQSLLQI QTLEPESCLT LESISPGYCK PFKLESPPPP  120
PPAPSSAVEL PNESVKERRK RKRMRAPKNE EEVENQRMTH IAIERNRRRQ MNEHLNSLKC  180
LIPQSYLQRG DQASIIGGAI DFVKQLEQLL HSLEAKKRVE NGDENEEKMK SVSSRASASV  240
SDEGLAAGRD AAEVDTAVIQ NHVSLKVWCK RRQGQTLRAI VSLEELKLTV LHLNVTSSLD  300
SVFYSFNLKM EDDCELGSAD EITTAVRQIF KHINGERCGQ PLVDSVDFDL PIDKISGGKI  360
STM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RRKRKR
2156167RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522878.10.0PREDICTED: transcription factor bHLH57-like isoform X1
SwissprotQ9M1287e-96BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX541e-96E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY21e-96V4KIY2_EUTSA; Uncharacterized protein
STRINGXP_010522878.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]