PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522879.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 351aa    MW: 39165.4 Da    PI: 5.2145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13144195155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ L+ l+P++   + ++ + a+i   A++++k+L+
  XP_010522879.1 144 QRMTHIAIERNRRRQMNEHLNSLKCLIPQS---YLQRGDQASIIGGAIDFVKQLE 195
                     79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.41E-11142199No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15142207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.71143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDADFSEAGC SQHELLLSSG SFRFSDEAEE EAAVHVQFSD AATIEDSIPF LRMLKSVKPT  60
TFLPFKSEPN ILQSLLQIQT LEPESCLTLE SISPGYCKPF KLESPPPPPP APSSAVELPN  120
ESVKERRKRK RMRAPKNEEE VENQRMTHIA IERNRRRQMN EHLNSLKCLI PQSYLQRGDQ  180
ASIIGGAIDF VKQLEQLLHS LEAKKRVENG DENEEKMKSV SSRASASVSD EGLAAGRDAA  240
EVDTAVIQNH VSLKVWCKRR QGQTLRAIVS LEELKLTVLH LNVTSSLDSV FYSFNLKMED  300
DCELGSADEI TTAVRQIFKH INGERCGQPL VDSVDFDLPI DKISGGKIST M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RRKRKR
2144155RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522879.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522879.10.0PREDICTED: transcription factor bHLH57-like isoform X2
SwissprotQ9M1284e-96BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX545e-97E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY25e-97V4KIY2_EUTSA; Uncharacterized protein
STRINGXP_010522878.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.16e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]