PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522939.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 370aa    MW: 40008.7 Da    PI: 8.5765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.24.9e-20252312363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e krerrkq+NRe+ArrsR+RK+ae eeL++kv++L +eN++L++el+ l+++++kl+ e+
  XP_010522939.1 252 EKKRERRKQSNRESARRSRLRKQAEAEELARKVDSLATENMTLRSELNLLNEKSEKLRLEK 312
                     679******************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.4E-32193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.2E-12125224No hitNo description
SMARTSM003381.3E-15250314IPR004827Basic-leucine zipper domain
PfamPF001707.0E-18252312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082252315IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.3E-13252309No hitNo description
SuperFamilySSF579595.38E-10254308No hitNo description
CDDcd147021.01E-21255304No hitNo description
PROSITE patternPS000360257272IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGSNEEGKSS KSEKSSPSAP EQSNVHVYPD WGAMQAYYGP RVVIPPYYNS TVAPGHAPPP  60
YIWAPPSPMM APYGAPYPAF CPPGGVYAHP GIPMTQGPTV QASPAPAATA PLSMDTPKKT  120
PGNTDQGFMK KLKEFDGLAM SVGNDKVERS EQDEPRTSQS SENEGSSNGS YSNTTGGEQS  180
KRKRSLEGTS AMDGGPPTQV NPLSTRESMN GKPTATMVRP VMHTSLELQG SSGMNGAIQP  240
CTVIPPEVWL QEKKRERRKQ SNRESARRSR LRKQAEAEEL ARKVDSLATE NMTLRSELNL  300
LNEKSEKLRL EKEELLEKLG AAEGRGKTEN LISRVENNEG GGSGGETTYE KTSKKVKHQL  360
VDLSHPVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272RRSRLRK
2266273RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522939.10.0PREDICTED: G-box-binding factor 2 isoform X1
RefseqXP_019056519.10.0PREDICTED: G-box-binding factor 2 isoform X1
SwissprotP427751e-124GBF2_ARATH; G-box-binding factor 2
TrEMBLA0A1J3I0L31e-145A0A1J3I0L3_NOCCA; G-box-binding factor 2
STRINGXP_010522939.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.15e-66G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]