PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522993.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 384aa    MW: 43773.4 Da    PI: 6.6736
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002481103323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F +   L++H  tH
  XP_010522993.1  81 CSyeGCGKTFVDAGALRKHSHTH 103
                     77779**************9888 PP
2zf-C2H216.42.6e-05108132123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F ++s LkrH   H
  XP_010522993.1 108 YVCHydGCGKKFLDSSKLKRHFLIH 132
                     9********************8877 PP
3zf-C2H220.71.1e-06138162123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk Fs   nL++H++tH
  XP_010522993.1 138 FICPheGCGKAFSLDFNLRSHMKTH 162
                     78**********************9 PP
4zf-C2H215.26.3e-05168193123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     + Cp   Cgk++ + + Lk+H  t H
  XP_010522993.1 168 HICPypGCGKRYAHEYKLKNHVATsH 193
                     679999****************9988 PP
5zf-C2H212.90.00032232257123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   C k + + + Lk H+++ H
  XP_010522993.1 232 YACPyeGCEKAYIHEYKLKLHLKReH 257
                     89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-1474105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.86679108IPR007087Zinc finger, C2H2
SMARTSM003550.002379103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576674.14E-882132No hitNo description
Gene3DG3DSA:3.30.160.606.6E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0019108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-14119173No hitNo description
Gene3DG3DSA:3.30.160.606.6E-20129163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.9E-4138162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591138167IPR007087Zinc finger, C2H2
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8164191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025168193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8229254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.57E-5229255No hitNo description
SMARTSM003550.012232257IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349232262IPR007087Zinc finger, C2H2
PROSITE patternPS000280234257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEHHQFAYNN PFERRPILRT KAPAVKWVKE WVPQDVVATG GKCYLLKWVT EDTLKKLKEK  60
EKEPEAPEPE PEPTTEVLFL CSYEGCGKTF VDAGALRKHS HTHGERQYVC HYDGCGKKFL  120
DSSKLKRHFL IHTGERDFIC PHEGCGKAFS LDFNLRSHMK THSQENYHIC PYPGCGKRYA  180
HEYKLKNHVA TSHEKNVAAE TPKYSTPPTE KVSRNLKTSS AAYGSASLDR PYACPYEGCE  240
KAYIHEYKLK LHLKREHPGH LSEENAENAN TTAATINNKN NGENDMDEGS DQDAYGKHSN  300
GKVQKQQGRT KPSLRLPPGK AGKKGPRSSP ATVTVSKKPW QVKGTFEEEE EDSEETQEDR  360
ENVEEGWRYG ENNEDDDEET EYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-36811918116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522993.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522993.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-179YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A087GQL70.0A0A087GQL7_ARAAL; Uncharacterized protein
STRINGXP_010522992.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-162C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]