PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523041.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 815aa    MW: 88094.9 Da    PI: 6.281
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.8e-21121176156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_010523041.1 121 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 176
                     688999***********************************************999 PP
2START201.24.4e-633205441206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+Wvk      e++n++e++++f+++ +     + +ea+r++g+v+ ++  lve+l+d++ +W+e+++    +a+t+
  XP_010523041.1 320 ELALTAMDELVKLAQTDEPLWVKGLdderEILNQEEYVRSFPPTVGlkpagFVTEASRTTGMVIINSLALVETLMDSN-RWTEMFPciisRASTT 413
                     5899*******************999999*************9877********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis g      ga+qlm aelq+lsplvp R+  f+R+++q+ +g+w++vdvSvd  ++++   + +  ++lpSg+++++++ng+skvtwveh+
  XP_010523041.1 414 DVISGGmagtrnGAIQLMHAELQVLSPLVPvREANFLRFCKQHAEGVWAVVDVSVDGVRENSGCLPAMSLRRLPSGCVVQDMPNGYSKVTWVEHA 508
                     **************************************************************9555555569*********************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r++++sgl +ga++wvatlqrqce+
  XP_010523041.1 509 EYEENQVHQLYRPMLRSGLGFGAQRWVATLQRQCEC 544
                     **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-20107178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-22110178IPR009057Homeodomain-like
PROSITE profilePS5007117.265118178IPR001356Homeobox domain
SMARTSM003894.3E-18119182IPR001356Homeobox domain
CDDcd000861.01E-18120178No hitNo description
PfamPF000461.5E-18121176IPR001356Homeobox domain
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PROSITE profilePS5084841.339311547IPR002913START domain
CDDcd088752.70E-122315543No hitNo description
SuperFamilySSF559615.57E-31315544No hitNo description
SMARTSM002341.4E-42320544IPR002913START domain
PfamPF018522.0E-55320544IPR002913START domain
SuperFamilySSF559619.07E-24565800No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MNFGGLLDNS SGGGGGSRIL SDISYVNHPN AAAAADPRGA MSLFSPPFSK SVFSSPGLSL  60
AIVQPERENR GEASMRASGD NLEGSANRRS REEEHESRSG SDNVEGISGD DQDAADKPPR  120
KKRYHRHTPQ QIQELEAMFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN RRTQMKTQLE  180
RHENALLRQE NDKLRAENMS IREAMRNPIC SSCGGPAMLG DVSLEEQHLR IENARLKDEL  240
DRVCALAGKF LGRSISGDPP LPNSSLELGV GTTASANAGG FGFPPDFGIS STAVRCLPTI  300
PPQPLVSGVT GIDQRSVLLE LALTAMDELV KLAQTDEPLW VKGLDDEREI LNQEEYVRSF  360
PPTVGLKPAG FVTEASRTTG MVIINSLALV ETLMDSNRWT EMFPCIISRA STTDVISGGM  420
AGTRNGAIQL MHAELQVLSP LVPVREANFL RFCKQHAEGV WAVVDVSVDG VRENSGCLPA  480
MSLRRLPSGC VVQDMPNGYS KVTWVEHAEY EENQVHQLYR PMLRSGLGFG AQRWVATLQR  540
QCECLAILMS SSVNPPDNGA ITAGGRKSML KLAQRMTYNF CSGISAPSVQ SWSKLTVGHV  600
GPDVRVMTRK SVDDPGEPPG IVLSAATSVW VPGSPQRLFD FLRDERLRCE WDILSNGGPM  660
QEMAHIAKGQ DEGNSVCLLR SNAMNASQSS MLILQETRID ASGALVVYAP VDIPAMHVVM  720
NGGDSSYVAL LPSGFAILPD GGGPSSPHGG GPASPHGGGV SPRPPAPRGS LLTVAFQILV  780
NSLPTAKLTV ESVETVNNLI TCTVQKIRAA LHSDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523041.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A178V6U40.0A0A178V6U4_ARATH; ANL2
STRINGXP_010523042.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]