PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523042.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 816aa    MW: 88264.1 Da    PI: 6.4662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.8e-21117172156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_010523042.1 117 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 172
                     688999***********************************************999 PP
2START201.24.4e-633165401206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+Wvk      e++n++e++++f+++ +     + +ea+r++g+v+ ++  lve+l+d++ +W+e+++    +a+t+
  XP_010523042.1 316 ELALTAMDELVKLAQTDEPLWVKGLdderEILNQEEYVRSFPPTVGlkpagFVTEASRTTGMVIINSLALVETLMDSN-RWTEMFPciisRASTT 409
                     5899*******************999999*************9877********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis g      ga+qlm aelq+lsplvp R+  f+R+++q+ +g+w++vdvSvd  ++++   + +  ++lpSg+++++++ng+skvtwveh+
  XP_010523042.1 410 DVISGGmagtrnGAIQLMHAELQVLSPLVPvREANFLRFCKQHAEGVWAVVDVSVDGVRENSGCLPAMSLRRLPSGCVVQDMPNGYSKVTWVEHA 504
                     **************************************************************9555555569*********************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r++++sgl +ga++wvatlqrqce+
  XP_010523042.1 505 EYEENQVHQLYRPMLRSGLGFGAQRWVATLQRQCEC 540
                     **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-20103174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-22106174IPR009057Homeodomain-like
PROSITE profilePS5007117.265114174IPR001356Homeobox domain
SMARTSM003894.3E-18115178IPR001356Homeobox domain
CDDcd000861.01E-18116174No hitNo description
PfamPF000461.5E-18117172IPR001356Homeobox domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PROSITE profilePS5084841.339307543IPR002913START domain
SuperFamilySSF559615.57E-31311540No hitNo description
CDDcd088752.52E-122311539No hitNo description
PfamPF018522.0E-55316540IPR002913START domain
SMARTSM002341.4E-42316540IPR002913START domain
SuperFamilySSF559611.28E-23561739No hitNo description
SuperFamilySSF559611.28E-23770801No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MNFGGLLDNS SGGGGGSRIL SDISYVNHPN ANPRGAMSLF SPPFSKSVFS SPGLSLAIVQ  60
PERENRGEAS MRASGDNLEG SANRRSREEE HESRSGSDNV EGISGDDQDA ADKPPRKKRY  120
HRHTPQQIQE LEAMFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN  180
ALLRQENDKL RAENMSIREA MRNPICSSCG GPAMLGDVSL EEQHLRIENA RLKDELDRVC  240
ALAGKFLGRS ISGDPPLPNS SLELGVGTTA SANAGGFGFP PDFGISSTAV RCLPTIPPQP  300
LVSGVTGIDQ RSVLLELALT AMDELVKLAQ TDEPLWVKGL DDEREILNQE EYVRSFPPTV  360
GLKPAGFVTE ASRTTGMVII NSLALVETLM DSNRWTEMFP CIISRASTTD VISGGMAGTR  420
NGAIQLMHAE LQVLSPLVPV REANFLRFCK QHAEGVWAVV DVSVDGVREN SGCLPAMSLR  480
RLPSGCVVQD MPNGYSKVTW VEHAEYEENQ VHQLYRPMLR SGLGFGAQRW VATLQRQCEC  540
LAILMSSSVN PPDNGAITAG GRKSMLKLAQ RMTYNFCSGI SAPSVQSWSK LTVGHVGPDV  600
RVMTRKSVDD PGEPPGIVLS AATSVWVPGS PQRLFDFLRD ERLRCEWDIL SNGGPMQEMA  660
HIAKGQDEGN SVCLLRSNAM NASQSSMLIL QETRIDASGA LVVYAPVDIP AMHVVMNGGD  720
SSYVALLPSG FAILPDGGGP SSPHGGGGSP RGPASPHGGG VSPRPPAPRG SLLTVAFQIL  780
VNSLPTAKLT VESVETVNNL ITCTVQKIRA ALHSDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523042.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A178V6U40.0A0A178V6U4_ARATH; ANL2
STRINGXP_010523042.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]