PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523093.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 227aa    MW: 25136.3 Da    PI: 4.8708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000697395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F+++  L  H  +H
  XP_010523093.1 73 FQCKACKKVFTSHQALGGHRASH 95
                    89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-97297IPR007087Zinc finger, C2H2
SMARTSM003550.0727395IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.28E-77395No hitNo description
PROSITE profilePS5015710.15973100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.601.104.8E-4106138No hitNo description
SuperFamilySSF576672.28E-7143170No hitNo description
PROSITE profilePS501579.203148170IPR007087Zinc finger, C2H2
SMARTSM003550.48148170IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-12148171IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MFSRRLDGEN KSVRRSKRER SSSILSDKED EDLANCLVLL SNSGTVVGDG DDDNKHGDGR  60
GKSVNKGKAG PAFQCKACKK VFTSHQALGG HRASHKKVKG CFASEDKEEE EEEEEEEEEE  120
EEEDEEEEEE EEEERSTAQI TRKRTNSHEC SICHRVFASG QALGGHKRCH WLTPSNNLMR  180
TPSSQREPSL DLNLACSVDR TVMKVGGGGG TGNSSSSWLQ LSSGDWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523093.11e-164PREDICTED: zinc finger protein ZAT2
TrEMBLA0A178W2961e-78A0A178W296_ARATH; Uncharacterized protein
TrEMBLQ3EDL32e-78Q3EDL3_ARATH; At1g02040
STRINGXP_010523093.11e-163(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-23C2H2-like zinc finger protein