PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523094.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 343aa    MW: 37881 Da    PI: 7.3251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.9e-16178223555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  XP_010523094.1 178 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 223
                     9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-18171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-18178231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-16178226No hitNo description
PfamPF000102.1E-13178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-18179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSQCVPTWDV DDSPTTARHS HRSHGAAADI PLLEEYEVAE LTWENGQLAL HGLGPPRAQT  60
QTKYVSGGTL ESIVNQATNS NNKGMDAMVP GSCRRDHPEE EAAAPKRPRR GDQISVSGSA  120
TVGRIRTTDS SGMGFTSTSL DDHYSFSPEM EVTHEEDTKN TAAKSSVSTK RSRAAAIHNQ  180
SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMSMPSMMLP  240
MAMQQQLQMS MMANHMGLGM GLGVMDMNSM NRAASNMMPN PFMPMAWDTA ASNDCRYPSP  300
VIPDPMAAFL SCQSQPMTMD AYSRMAALYQ QMQQHLPPPS NLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRD
2182187RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523094.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523094.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-104UNE10_ARATH; Transcription factor UNE10
TrEMBLV4MYL21e-116V4MYL2_EUTSA; Uncharacterized protein
STRINGXP_010523094.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]